Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032775 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D016846 3.6e-24 114.0 54 100.0
CSS0040284 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D008670 3.1e-20 100.9 52 88.5
Dinv00874 Davidia involucrata HOM05D000223 ORTHO05D016846 3.8e-18 94.0 52 82.7
Dinv30090 Davidia involucrata HOM05D000223 ORTHO05D008670 3.8e-18 94.0 52 82.7
Actinidia17970 Actinidia chinensis HOM05D000494 ORTHO05D008670 1.5e-17 92.0 52 82.7
CiPaw.10G043700 Carya illinoinensis HOM05D000223 ORTHO05D008670 5.5e-17 90.1 53 73.6
vmacro07765 Vaccinium macrocarpon HOM05D000088 ORTHO05D008670 9.5e-17 89.4 52 76.9
Hma1.2p1_0031F.1_g018410 Hydrangea macrophylla HOM05D000223 ORTHO05D008670 2.8e-16 87.8 51 76.5
Hma1.2p1_0031F.1_g018420 Hydrangea macrophylla HOM05D000223 ORTHO05D016846 2.8e-16 87.8 51 76.5
RhsimUnG0018900 Rhododendron simsii HOM05D000494 ORTHO05D008670 4.7e-16 87.0 52 75.0
RhsimUnG0209300 Rhododendron simsii HOM05D000494 ORTHO05D008670 4.7e-16 87.0 52 75.0
Nn7g36998 Nelumbo nucifera HOM05D000223 ORTHO05D008670 6.1e-16 86.7 51 74.5
A03p23000 Brassica napus HOM05D000223 ORTHO05D008670 1.4e-15 85.5 52 71.2
BraA03t11523Z Brassica rapa HOM05D000223 ORTHO05D008670 1.4e-15 85.5 52 73.1
Manes.08G063732 Manihot esculenta HOM05D000223 ORTHO05D008670 1.4e-15 85.5 52 75.0
PGR142G0562 Punica granatum HOM05D000223 ORTHO05D008670 1.4e-15 85.5 52 69.2
BcaB01g03508 Brassica carinata HOM05D000223 ORTHO05D008670 1.8e-15 85.1 51 72.5
Potri.016G030800 Populus trichocarpa HOM05D000223 ORTHO05D008670 1.8e-15 85.1 52 73.1
BolC3t15109H Brassica oleracea HOM05D000223 ORTHO05D008670 2.3e-15 84.7 52 71.2
Cpa.g.sc37.35 Carica papaya HOM05D000223 ORTHO05D008670 2.3e-15 84.7 52 71.2
TAR633G0654 Trochodendron aralioides HOM05D000223 ORTHO05D008670 2.3e-15 84.7 52 71.2
Aa31LG3G1240 Aethionema arabicum HOM05D000223 ORTHO05D008670 3.0e-15 84.3 52 71.2
Atru.chr1.1351 Acer truncatum HOM05D000223 ORTHO05D008670 4.0e-15 84.0 52 71.2
Ciclev10011248m.g Citrus clementina HOM05D000223 ORTHO05D008670 4.0e-15 84.0 51 72.5
Lj1C1082G8 Lonicera japonica HOM05D000223 ORTHO05D008670 4.0e-15 84.0 52 73.1
COL.COLO4_19401 Corchorus olitorius HOM05D000223 ORTHO05D008670 5.2e-15 83.6 52 67.3
BcaC01g05371 Brassica carinata HOM05D000223 ORTHO05D008670 6.8e-15 83.2 52 69.2
Lalb_Chr21g0316801 Lupinus albus HOM05D000223 ORTHO05D008670 6.8e-15 83.2 52 67.3
ATR0724G099 Amborella trichopoda HOM05D000223 ORTHO05D008670 8.9e-15 82.8 52 67.3
C03p27270 Brassica napus HOM05D000223 ORTHO05D008670 8.9e-15 82.8 52 69.2
MBI10_g42733_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D008670 8.9e-15 82.8 52 69.2
Atru.chr1.1332 Acer truncatum HOM05D000223 ORTHO05D008670 1.2e-14 82.4 52 69.2
Carub.0004s2318 Capsella rubella HOM05D000223 ORTHO05D008670 1.2e-14 82.4 52 69.2
THA.LOC104814580 Tarenaya hassleriana HOM05D000223 ORTHO05D008670 1.2e-14 82.4 51 70.6
TWI53G0492 Tripterygium wilfordii HOM05D000223 ORTHO05D008670 1.2e-14 82.4 52 67.3
ClCG10G016330 Citrullus lanatus HOM05D000223 ORTHO05D008670 2.0e-14 81.6 52 69.2
Sc25g0005540 Simmondsia chinensis HOM05D000223 ORTHO05D008670 2.0e-14 81.6 52 69.2
Thecc.05G122400 Theobroma cacao HOM05D000223 ORTHO05D008670 2.0e-14 81.6 52 67.3
GSVIVG01025802001 Vitis vinifera HOM05D000223 ORTHO05D008670 2.0e-14 81.6 52 69.2
CsaV3_3G040010 Cucumis sativus L. HOM05D000223 ORTHO05D008670 2.6e-14 81.3 52 69.2
Eucgr.K01673 Eucalyptus grandis HOM05D000223 ORTHO05D008670 2.6e-14 81.3 52 69.2
Sabra16G0034100 Salix brachista HOM05D000494 ORTHO05D008670 2.6e-14 81.3 52 69.2
Sp4g23190 Schrenkiella parvula HOM05D000223 ORTHO05D008670 2.6e-14 81.3 52 69.2
CANSAT35G0549 Cannabis sativa HOM05D000223 ORTHO05D008670 3.4e-14 80.9 52 67.3
MD12G1099600 Malus domestica HOM05D000223 ORTHO05D008670 3.4e-14 80.9 52 65.4
AL4G38810 Arabidopsis lyrata HOM05D000223 ORTHO05D008670 4.4e-14 80.5 52 67.3
EL10Ac3g07290 Beta vulgaris HOM05D000223 ORTHO05D008670 4.4e-14 80.5 52 65.4
Cc06_g20510 Coffea canephora HOM05D000494 ORTHO05D008670 4.4e-14 80.5 52 67.3
QL07p013384 Quercus lobata HOM05D000223 ORTHO05D008670 4.4e-14 80.5 52 67.3
CARHR135980 Cardamine hirsuta HOM05D000223 ORTHO05D008670 7.5e-14 79.7 52 65.4
Eucgr.L02445 Eucalyptus grandis HOM05D000223 ORTHO05D008670 7.5e-14 79.7 52 67.3
Thhalv10016363m.g Eutrema salsugineum HOM05D000223 ORTHO05D008670 7.5e-14 79.7 52 67.3
TPR.G16472 Trifolium pratense HOM05D000223 ORTHO05D008670 7.5e-14 79.7 52 67.3
RcHm_v2.0_Chr6g0284731 Rosa chinensis HOM05D000223 ORTHO05D008670 9.8e-14 79.3 52 65.4
MELO3C009743.2 Cucumis melo HOM05D000223 ORTHO05D008670 1.3e-13 79.0 52 67.3
Lsat_1_v5_gn_9_32241 Lactuca sativa HOM05D000223 ORTHO05D008670 1.3e-13 79.0 51 68.6
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 1.3e-13 79.0 52 63.5
FvH4_2g18940 Fragaria vesca HOM05D000223 ORTHO05D008670 1.7e-13 78.6 52 63.5
FAN15G2663 Fragaria x ananassa HOM05D000223 ORTHO05D008670 1.7e-13 78.6 52 63.5
FAN24G3139 Fragaria x ananassa HOM05D000223 ORTHO05D008670 1.7e-13 78.6 52 63.5
Sed0010522 Sechium edule HOM05D000223 ORTHO05D008670 1.7e-13 78.6 52 67.3
SGA_v2.0_scaffold69G23178 Striga asiatica HOM05D000223 ORTHO05D008670 1.7e-13 78.6 52 63.5
Medtr1g050520 Medicago truncatula HOM05D000223 ORTHO05D008670 2.8e-13 77.8 52 65.4
Os01g0541900 Oryza sativa ssp. japonica HOM05D000223 ORTHO05D008670 2.8e-13 77.8 51 62.7
VMungo0720G1770 Vigna mungo HOM05D000223 ORTHO05D008670 2.8e-13 77.8 52 63.5
Duzib128G1945 Durio zibethinus HOM05D000223 ORTHO05D008670 3.7e-13 77.4 52 63.5
Gohir.A13G001700 Gossypium hirsutum HOM05D000223 ORTHO05D008670 3.7e-13 77.4 50 66.0
Gohir.D13G000200 Gossypium hirsutum HOM05D000223 ORTHO05D008670 3.7e-13 77.4 50 66.0
Gorai.013G001000 Gossypium raimondii HOM05D000223 ORTHO05D008670 3.7e-13 77.4 50 66.0
Nitab4.5_0002068g0040 Nicotiana tabacum HOM05D000223 ORTHO05D008670 4.9e-13 77.0 51 66.7
Lj5g0002002 Lotus japonicus HOM05D000223 ORTHO05D008670 6.3e-13 76.6 52 63.5
SEGI_28896 Sequoiadendron giganteum HOM05D000223 ORTHO05D016846 6.3e-13 76.6 52 61.5
Migut.J01618 Erythranthe guttata HOM05D000223 ORTHO05D008670 8.3e-13 76.3 51 66.7
Glyma.02G162300 Glycine max HOM05D000223 ORTHO05D008670 1.4e-12 75.5 52 63.5
HanXRQChr10g0298501 Helianthus annuus HOM05D000223 ORTHO05D008670 1.4e-12 75.5 51 64.7
AUR62018399 Chenopodium quinoa HOM05D000223 ORTHO05D008670 3.2e-12 74.3 52 61.5
AUR62021044 Chenopodium quinoa HOM05D000223 ORTHO05D008670 3.2e-12 74.3 52 61.5
DCAR_020602 Daucus carota HOM05D000223 ORTHO05D008670 4.1e-12 73.9 52 61.5
Ca_05362_v3 Cicer arietinum L. HOM05D000223 ORTHO05D008670 5.4e-12 73.6 52 61.5
Ah.04g150620 Amaranthus hybridus HOM05D000223 ORTHO05D008670 1.2e-11 72.4 50 60.0
Aqoxy1G00057 Aquilegia oxysepala HOM05D000223 ORTHO05D008670 1.2e-11 72.4 50 64.0
Sopen01g020840 Solanum pennellii HOM05D000223 ORTHO05D008670 1.2e-11 72.4 51 64.7
HPP92_021586 Vanilla planifolia HOM05D000394 ORTHO05D000299 1.6e-11 72.0 51 58.8
ECA247G3244 Erigeron canadensis HOM05D000223 ORTHO05D008670 2.7e-11 71.2 51 62.7
Peaxi162Scf00470g00048 Petunia axillaris HOM05D000223 ORTHO05D008670 2.7e-11 71.2 51 60.8
CAN.G197.1 Capsicum annuum HOM05D000223 ORTHO05D008670 4.5e-11 70.5 51 62.7
Solyc01g056690.4 Solanum lycopersicum HOM05D000223 ORTHO05D008670 4.5e-11 70.5 51 62.7
Haze_20277 Corylus avellana HOM05D000223 ORTHO05D016846 7.8e-11 69.7 52 59.6
Haze_20282 Corylus avellana HOM05D000223 ORTHO05D016846 7.8e-11 69.7 52 59.6
PSO384G3882 Papaver somniferum HOM05D000223 ORTHO05D008670 1.0e-10 69.3 52 61.5
Hund19071 Selenicereus undatus HOM05D000223 ORTHO05D008670 1.5e-09 65.5 50 60.0
MSTRG.19778 Avicennia marina HOM05D000088 ORTHO05D008670 4.3e-09 63.9 51 56.9
SalBow6G2441 Salvia bowleyana HOM05D000088 ORTHO05D008670 1.6e-08 62.0 51 52.9
BcaNung05542 Brassica carinata HOM05D000088 ORTHO05D008670 1.4e-07 58.9 52 55.8
AagrBONN_evm.TU.Sc2ySwM_368.1033 Anthoceros agrestis HOM05D000223 ORTHO05D008670 2.3e-07 58.2 51 52.9
SMO115G0162 Selaginella moellendorffii HOM05D000223 ORTHO05D008670 2.6e-06 54.7 52 48.1


User provided reference genes

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