Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.9e-224 780.0 415 100.0
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.3e-195 686.4 471 81.1
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 4.3e-194 681.4 469 80.4
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 7.4e-194 680.6 469 80.2
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 8.2e-193 677.2 469 79.7
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 6.9e-192 674.1 469 78.7
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 9.0e-192 673.7 445 81.6
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 9.0e-192 673.7 472 78.6
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.3e-190 669.8 471 78.6
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.3e-190 669.8 445 82.0
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.9e-190 668.7 469 79.3
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 3.8e-190 668.3 469 79.1
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.4e-189 666.4 469 77.2
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.4e-189 666.4 469 78.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 2.5e-189 665.6 469 78.3
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 2.5e-189 665.6 469 78.9
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 2.5e-189 665.6 469 78.9
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 3.2e-189 665.2 469 77.0
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 2.7e-188 662.1 469 78.0
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 6.1e-188 661.0 470 77.7
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 7.9e-188 660.6 469 77.2
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 1.0e-187 660.2 469 78.3
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.0e-187 660.2 469 77.6
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.0e-187 660.2 469 78.0
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 3.0e-187 658.7 470 77.0
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.1e-187 657.9 471 77.7
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 6.7e-187 657.5 469 77.4
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 6.7e-187 657.5 469 78.0
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 6.7e-187 657.5 469 77.6
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 8.7e-187 657.1 469 77.8
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.1e-186 656.8 469 78.0
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 1.1e-186 656.8 469 77.6
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.1e-186 656.8 469 77.8
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.9e-186 656.0 469 77.0
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.9e-186 656.0 469 77.0
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 2.5e-186 655.6 469 76.8
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 4.3e-186 654.8 469 76.8
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 5.7e-186 654.4 469 77.2
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 5.7e-186 654.4 506 73.7
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 9.7e-186 653.7 469 77.6
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.3e-185 653.3 469 76.5
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.6e-185 652.9 468 78.2
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 3.7e-185 651.7 469 77.2
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.4e-184 649.8 468 77.6
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.4e-184 649.8 470 77.0
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 2.4e-184 649.0 469 78.0
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 4.1e-184 648.3 461 77.7
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 9.0e-184 647.1 470 76.8
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 2.0e-183 646.0 469 75.7
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 2.0e-183 646.0 468 76.9
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 3.4e-183 645.2 470 76.0
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 3.4e-183 645.2 470 76.0
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 4.5e-183 644.8 469 77.0
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 5.9e-183 644.4 468 75.6
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 5.9e-183 644.4 493 74.2
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 6.5e-182 641.0 470 75.5
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.9e-181 639.4 465 76.1
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.9e-181 639.4 506 71.7
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 4.2e-181 638.3 469 74.8
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.6e-180 636.3 463 76.0
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 4.1e-176 621.7 469 73.3
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 5.3e-176 621.3 469 72.7
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 2.6e-175 619.0 469 72.5
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 2.6e-175 619.0 469 73.1
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 4.5e-175 618.2 469 72.3
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 7.7e-175 617.5 469 72.3
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.3e-174 616.7 449 77.1
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 5.0e-174 614.8 469 72.1
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 5.0e-174 614.8 471 72.4
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 5.0e-174 614.8 469 72.9
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 8.5e-174 614.0 469 71.9
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 8.5e-174 614.0 469 72.1
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.5e-174 614.0 471 72.0
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 1.1e-173 613.6 545 66.2
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.4e-173 613.2 469 71.4
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 2.5e-173 612.5 469 71.9
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 2.5e-173 612.5 469 71.6
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 4.2e-173 611.7 469 71.6
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 4.2e-173 611.7 469 71.6
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 4.7e-172 608.2 470 71.7
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 4.7e-172 608.2 470 71.7
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.3e-171 605.9 469 71.4
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 2.6e-170 602.4 471 71.3
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 2.2e-169 599.4 493 68.4
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.1e-168 597.0 491 69.7
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 5.3e-168 594.7 497 67.4
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 5.9e-167 591.3 443 74.0
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 1.5e-165 586.6 420 76.4
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 1.9e-165 586.3 492 68.5
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 9.4e-165 583.9 399 79.7
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.7e-161 573.2 418 76.8
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.2e-159 567.0 361 85.0
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 3.8e-158 562.0 470 70.4
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.2e-156 557.0 361 83.9
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 8.0e-156 554.3 418 74.6
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 8.0e-156 554.3 418 74.6
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.0e-154 549.7 418 75.4
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.8e-152 543.1 340 87.4
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 8.5e-150 534.3 469 63.1
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 4.1e-144 515.4 392 74.5
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.2e-143 513.8 356 79.5
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.0e-142 510.8 324 86.4
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 8.6e-134 481.1 351 75.8
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 4.9e-129 465.3 467 56.7
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 2.7e-127 459.5 328 79.3
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 2.8e-124 449.5 470 52.8
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.8e-123 444.9 282 85.8
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.4e-120 436.4 469 57.1
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 7.6e-114 414.8 312 70.8
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 9.2e-112 407.9 324 71.9
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 7.1e-104 381.7 365 62.2
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 6.4e-97 358.6 246 80.5
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.0e-81 308.1 312 59.9
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 6.0e-79 298.9 238 71.4
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.3e-70 270.4 301 52.5
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 4.1e-59 233.0 199 70.4
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.6e-58 230.3 293 49.1
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 8.5e-57 225.3 173 72.3
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.2e-56 223.4 182 66.5
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.0e-54 218.4 497 32.4
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.8e-51 207.6 160 73.1
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 9.1e-51 205.3 210 50.5
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 2.6e-45 187.2 111 89.2
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 7.7e-42 175.6 138 72.5
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 2.9e-41 173.7 98 91.8
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.5e-41 172.6 91 97.8
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.9e-40 171.0 331 34.4
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.4e-37 160.2 98 85.7
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.5e-34 149.8 78 98.7
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.2e-32 143.3 78 94.9
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.5e-29 134.8 125 63.2
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.7e-28 131.3 87 79.3
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 2.8e-28 130.6 76 84.2
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.1e-27 127.1 91 70.3
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 3.5e-26 123.6 484 26.2
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 4.5e-26 123.2 72 83.3
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 5.9e-26 122.9 91 69.2
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 8.6e-25 119.0 72 81.9
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.1e-24 118.6 72 83.3
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.5e-24 117.5 101 66.3
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 3.0e-22 110.5 71 80.3
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 7.5e-21 105.9 57 87.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 2.3e-14 84.3 52 84.6
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 5.2e-14 83.2 57 80.7
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.0e-13 81.3 51 86.3
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.4e-13 80.5 44 93.2
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 5.8e-13 79.7 74 60.8
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.3e-12 78.6 45 93.3
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 2.8e-07 60.8 33 93.9


User provided reference genes

Program Settings