Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032752 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D043291 2.3e-20 101.3 52 100.0
CSS0003099 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D043291 2.6e-11 71.2 67 61.2
Sc15g0005610 Simmondsia chinensis HOM05D000129 ORTHO05D000997 2.5e-06 54.7 30 86.7
SGA_v2.0_scaffold152G36819 Striga asiatica HOM05D000129 ORTHO05D000997 2.5e-06 54.7 30 90.0
AagrBONN_evm.TU.Sc2ySwM_344.3348 Anthoceros agrestis HOM05D000129 ORTHO05D000997 3.2e-06 54.3 26 100.0
BcaB08g37340 Brassica carinata HOM05D000129 ORTHO05D000997 3.2e-06 54.3 30 86.7
CDE01G0303 Ceratophyllum demersum HOM05D000129 ORTHO05D000997 3.2e-06 54.3 26 100.0
Migut.N02792 Erythranthe guttata HOM05D000129 ORTHO05D000997 3.2e-06 54.3 30 86.7
Mapoly0044s0031 Marchantia polymorpha HOM05D000129 ORTHO05D000997 3.2e-06 54.3 26 100.0
Pp3c11_7920 Physcomitrium patens HOM05D000129 ORTHO05D000997 3.2e-06 54.3 26 100.0
SalBow2G1224 Salvia bowleyana HOM05D000129 ORTHO05D000997 3.2e-06 54.3 30 86.7
Atru.chr13.850 Acer truncatum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Actinidia19583 Actinidia chinensis HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
ATR0739G155 Amborella trichopoda HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Aqoxy6G02557 Aquilegia oxysepala HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
AL1G20820 Arabidopsis lyrata HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
AT1G10130 Arabidopsis thaliana HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
BcaC05g24810 Brassica carinata HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
BcaC07g41841 Brassica carinata HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
A06p06780 Brassica napus HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
A09p65190 Brassica napus HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
C05p08260 Brassica napus HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
C08p49110 Brassica napus HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
BolC5t29577H Brassica oleracea HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
BraA06t23893Z Brassica rapa HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
BraA09t41862Z Brassica rapa HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
CSS0014514 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
CANSAT11G2151 Cannabis sativa HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
CAN.G674.46 Capsicum annuum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
CARHR010230 Cardamine hirsuta HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Cpa.g.sc142.46 Carica papaya HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Cfa013761 Carpinus fangiana HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
CiPaw.07G173500 Carya illinoinensis HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
CBR_g19685 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-06 53.9 34 73.5
AUR62036019 Chenopodium quinoa HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
AUR62037950 Chenopodium quinoa HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
ClCG08G016600 Citrullus lanatus HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Cc10_g05070 Coffea canephora HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
COL.COLO4_28481 Corchorus olitorius HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Haze_22417 Corylus avellana HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
CsaV3_2G026010 Cucumis sativus L. HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Dinv44942 Davidia involucrata HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
ECA232G0094 Erigeron canadensis HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Eucgr.F02237 Eucalyptus grandis HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Thhalv10006682m.g Eutrema salsugineum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Gohir.A05G210900 Gossypium hirsutum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Gohir.D05G214200 Gossypium hirsutum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Gorai.009G220900 Gossypium raimondii HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
HanXRQChr12g0368611 Helianthus annuus HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Hma1.2p1_1170F.1_g263330 Hydrangea macrophylla HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Hma1.2p1_1170F.1_g263340 Hydrangea macrophylla HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Lsat_1_v5_gn_9_76580 Lactuca sativa HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Lj4C73G4 Lonicera japonica HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
MBI16_g12921_MAGBIO Magnolia biondii HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
MD15G1067300 Malus domestica HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Manes.18G047600 Manihot esculenta HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Nn5g30632 Nelumbo nucifera HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Nitab4.5_0005086g0040 Nicotiana tabacum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Nitab4.5_0005915g0020 Nicotiana tabacum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Oeu053077.1 Olea europaea HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Os03g0730800 Oryza sativa ssp. japonica HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
PSO541G1994 Papaver somniferum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
PSO675G3743 Papaver somniferum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Peaxi162Scf00551g00068 Petunia axillaris HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Potri.002G117400 Populus trichocarpa HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Potri.014G014700 Populus trichocarpa HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
PGR031G0208 Punica granatum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
QL12p038296 Quercus lobata HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Rhsim07G0219200 Rhododendron simsii HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Sabra14G0008800 Salix brachista HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Sp1g08760 Schrenkiella parvula HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Sed0025438 Sechium edule HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Hund02410 Selenicereus undatus HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
SEGI_00929 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Solyc07g022780.2 Solanum lycopersicum HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Sopen07g012030 Solanum pennellii HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Thecc.08G086700 Theobroma cacao HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
TAR381G0044 Trochodendron aralioides HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
vmacro22048 Vaccinium macrocarpon HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
HPP92_027954 Vanilla planifolia HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
GSVIVG01009320001 Vitis vinifera HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Zm00001eb056130 Zea mays HOM05D000129 ORTHO05D000997 4.2e-06 53.9 26 96.2
Aa31LG1G4760 Aethionema arabicum HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
arahy.Tifrunner.gnm1.ann1.2ZDN53 Arachis hypogaea HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
arahy.Tifrunner.gnm1.ann1.NRZN5K Arachis hypogaea HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
BolC8t52446H Brassica oleracea HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Carub.0001s0954 Capsella rubella HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Ca_15897_v3 Cicer arietinum L. HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Ciclev10000142m.g Citrus clementina HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
DCAR_027593 Daucus carota HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Duzib093G1703 Durio zibethinus HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Glyma.04G046700 Glycine max HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Lj1g0005699 Lotus japonicus HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Medtr3g103270 Medicago truncatula HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 9.5e-06 52.8 26 92.3
Phvul.009G072366 Phaseolus vulgaris HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Phvul.009G072800 Phaseolus vulgaris HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Psat5g037840 Pisum sativum HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
SMO268G0052 Selaginella moellendorffii HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
Sopen01g039940 Solanum pennellii HOM05D000129 ORTHO05D000997 9.5e-06 52.8 40 67.5
THA.LOC104816765 Tarenaya hassleriana HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3
VMungo1309G1806 Vigna mungo HOM05D000129 ORTHO05D000997 9.5e-06 52.8 26 92.3


User provided reference genes

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