Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.4e-118 427.9 210 100.0
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 7.5e-70 267.7 224 64.7
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 9.2e-68 260.8 220 64.1
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 5.6e-49 198.4 166 65.1
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.4e-46 189.1 219 49.8
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.3e-31 138.7 200 43.5
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 5.3e-31 138.7 200 41.5
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.5e-30 137.1 198 41.4
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 2.9e-29 132.9 196 43.4
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 3.8e-29 132.5 219 42.9
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.1e-28 131.0 200 42.0
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.9e-28 130.2 196 40.3
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.6e-27 127.1 198 40.9
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.6e-27 127.1 198 43.9
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 2.1e-27 126.7 199 41.7
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 6.1e-27 125.2 189 42.9
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 6.7e-26 121.7 199 38.7
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.2e-24 116.7 219 38.4
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.2e-24 116.7 219 38.4
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 6.3e-24 115.2 199 39.7
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 3.1e-23 112.8 212 37.3
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.3e-23 112.1 193 37.8
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.5e-22 110.5 150 42.7
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.9e-22 108.6 193 39.9
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 7.7e-22 108.2 201 36.3
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.0e-21 107.8 198 37.9
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.7e-21 107.1 197 39.1
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 2.2e-21 106.7 190 38.9
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.8e-21 105.9 192 35.9
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-21 105.1 196 39.8
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-19 100.1 153 45.1
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-19 99.8 191 34.6
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.6e-19 99.0 201 34.3
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.6e-19 99.0 191 35.1
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.9e-19 98.2 192 35.4
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.9e-19 98.2 176 43.2
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 2.3e-18 96.7 214 35.5
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 3.9e-18 95.9 187 32.6
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 3.9e-18 95.9 140 42.1
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.9e-18 95.9 140 42.1
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 6.7e-18 95.1 205 33.7
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-17 94.0 192 33.9
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 2.0e-17 93.6 161 39.8
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 2.0e-17 93.6 161 39.8
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.3e-17 92.4 199 34.2
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.3e-17 92.4 173 37.6
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 5.7e-17 92.0 187 32.1
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 5.7e-17 92.0 202 33.2
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 7.4e-17 91.7 140 40.7
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.2e-16 90.1 199 33.2
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.2e-16 90.1 195 36.4
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 2.8e-16 89.7 149 36.9
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.8e-16 89.0 189 36.0
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 8.2e-16 88.2 205 32.2
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 2.4e-15 86.7 228 32.0
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.1e-15 85.9 187 35.3
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 6.9e-15 85.1 194 33.0
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.1e-15 84.7 178 35.4
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-14 84.3 173 34.7
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.2e-14 84.3 186 32.8
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 1.2e-14 84.3 214 31.8
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.5e-14 84.0 176 32.4
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-14 83.2 130 40.8
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-14 83.2 130 40.8
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.4e-14 82.8 137 40.9
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 3.4e-14 82.8 191 30.4
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 3.4e-14 82.8 191 30.4
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 3.4e-14 82.8 191 30.4
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 7.7e-14 81.6 130 40.8
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 7.7e-14 81.6 130 40.8
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.0e-13 81.3 105 44.8
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-13 80.5 183 35.0
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 2.2e-13 80.1 197 31.0
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.2e-13 80.1 144 35.4
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.0e-13 79.0 155 38.1
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.4e-12 77.4 105 42.9
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.9e-12 77.0 217 28.6
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 1.9e-12 77.0 124 39.5
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 2.5e-12 76.6 159 34.0
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.5e-12 75.5 159 33.3
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 5.5e-12 75.5 185 30.3
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.2e-12 75.1 174 35.1
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.1e-11 73.6 155 34.8
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-11 73.6 176 31.8
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 2.1e-11 73.6 209 33.0
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 3.6e-11 72.8 190 31.6
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 3.6e-11 72.8 130 36.9
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 4.7e-11 72.4 127 34.6
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 6.1e-11 72.0 176 33.0
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.9e-11 71.6 176 30.7
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.0e-10 71.2 128 35.9
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.0e-10 71.2 197 30.5
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.0e-10 71.2 197 30.5
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-10 70.9 162 34.0
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-10 70.9 206 31.6
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-10 70.1 108 38.0
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.7e-10 68.6 162 34.0
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 6.7e-10 68.6 176 30.7
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 6.7e-10 68.6 130 35.4
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.8e-10 68.2 107 38.3
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.8e-10 68.2 96 42.7
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-09 67.8 174 31.6
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 2.0e-09 67.0 174 31.6
Sed0020964 Sechium edule HOM05D004865 ORTHO05D005949 2.0e-09 67.0 109 34.9
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 2.6e-09 66.6 147 34.0
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 2.6e-09 66.6 147 34.0
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 1.3e-08 64.3 142 33.8
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-08 64.3 87 43.7
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 2.2e-08 63.5 161 34.8
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-08 63.2 132 37.9
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 4.8e-08 62.4 71 42.3
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 6.3e-08 62.0 127 33.1
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 1.1e-07 61.2 158 29.7
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 1.1e-07 61.2 191 27.7
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.8e-07 60.5 194 29.4
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.4e-07 60.1 152 31.6
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-07 60.1 123 35.0
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 4.1e-07 59.3 146 34.2
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.3e-07 58.9 213 29.1
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 9.1e-07 58.2 151 30.5
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.2e-06 57.8 125 32.8
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.5e-06 57.4 80 43.8
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 2.6e-06 56.6 115 31.3
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.9e-06 55.5 76 44.7
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 7.7e-06 55.1 142 33.1
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 7.7e-06 55.1 99 39.4


User provided reference genes

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