Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 5.7e-261 903.7 440 100.0
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 7.7e-258 893.3 440 99.1
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 2.5e-240 835.1 440 90.7
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.7e-233 812.4 440 87.7
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 4.2e-232 807.7 440 88.2
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.1e-227 793.1 440 85.9
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 5.9e-226 787.3 454 86.8
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 1.1e-224 783.1 420 90.0
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 5.2e-222 774.2 439 84.7
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 2.0e-221 772.3 441 84.1
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 2.0e-221 772.3 440 84.1
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.7e-220 769.2 440 83.0
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.4e-219 766.1 439 83.1
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 4.6e-218 761.1 439 81.8
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 3.3e-216 755.0 440 82.5
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 4.3e-216 754.6 440 81.8
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 5.6e-216 754.2 439 81.3
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.1e-215 752.3 440 81.6
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 6.2e-215 750.7 438 80.6
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 6.2e-215 750.7 439 80.6
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 6.2e-215 750.7 441 82.1
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 8.0e-215 750.4 441 80.7
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 8.0e-215 750.4 438 81.7
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 8.0e-215 750.4 440 80.0
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.8e-214 749.2 440 81.4
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 2.3e-214 748.8 436 81.0
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 8.9e-214 746.9 430 81.9
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.2e-213 746.5 438 80.8
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.2e-213 746.5 432 81.2
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.2e-213 746.5 438 81.5
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 2.6e-213 745.3 438 80.6
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 2.6e-213 745.3 440 80.9
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 4.4e-213 744.6 434 81.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 5.8e-213 744.2 437 81.0
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.3e-212 743.0 427 83.6
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 1.7e-212 742.7 436 81.2
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.7e-212 742.7 430 81.2
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 3.7e-212 741.5 437 80.1
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 4.9e-212 741.1 432 80.8
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 6.4e-212 740.7 440 80.5
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.4e-211 739.6 421 83.8
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.9e-211 739.2 440 80.7
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 3.2e-211 738.4 441 79.6
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 7.0e-211 737.3 440 79.1
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.6e-210 736.1 438 79.9
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 2.1e-210 735.7 441 79.6
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 4.6e-210 734.6 440 81.4
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 1.3e-209 733.0 455 77.4
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.7e-209 732.6 426 81.2
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 3.9e-209 731.5 438 80.1
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 5.1e-209 731.1 440 77.7
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 4.3e-208 728.0 439 78.4
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 4.3e-208 728.0 421 82.9
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 9.5e-208 726.9 438 78.8
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.1e-207 725.7 442 79.4
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 4.7e-207 724.5 438 77.9
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.8e-206 722.6 440 76.6
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.1e-206 721.8 432 78.7
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 2.6e-205 718.8 438 77.2
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 4.4e-205 718.0 438 76.9
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.3e-204 716.5 436 76.8
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-204 716.5 448 76.8
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.7e-204 716.1 439 77.0
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.7e-204 716.1 473 76.3
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 3.7e-204 714.9 436 79.1
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 4.1e-203 711.4 423 79.2
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 4.1e-203 711.4 438 76.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.2e-202 709.9 423 79.4
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.6e-202 709.5 438 75.8
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 4.6e-202 708.0 437 76.2
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.0e-201 706.8 446 75.6
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.0e-201 705.3 438 77.6
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 3.0e-201 705.3 421 80.5
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 3.9e-201 704.9 437 76.2
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 5.1e-201 704.5 437 76.2
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.5e-200 703.0 436 78.0
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 2.5e-200 702.2 438 76.0
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 2.5e-200 702.2 437 75.7
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 7.3e-200 700.7 414 79.5
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.1e-199 699.1 432 76.4
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 6.2e-199 697.6 438 75.6
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.8e-198 696.0 396 82.8
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 3.1e-198 695.3 414 78.5
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.5e-197 693.0 464 73.3
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 2.0e-197 692.6 437 75.5
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 7.6e-197 690.6 421 79.1
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.2e-194 683.3 448 74.6
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.8e-190 669.5 432 72.2
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 4.9e-188 661.4 432 71.3
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.2e-186 656.8 496 67.3
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 7.8e-186 654.1 407 77.1
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 2.6e-181 639.0 433 68.6
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.3e-177 626.7 438 67.4
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.5e-176 623.2 447 69.6
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.0e-173 612.8 421 71.7
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 2.0e-173 612.8 478 61.9
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 1.3e-172 610.1 356 82.9
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 2.9e-172 609.0 393 74.6
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 4.9e-172 608.2 431 71.7
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 1.1e-171 607.1 540 60.6
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.9e-168 596.3 392 72.7
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 5.6e-168 594.7 364 78.6
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 3.5e-162 575.5 440 65.9
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.0e-157 559.7 438 64.4
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 5.9e-157 558.1 438 59.4
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.1e-155 553.9 438 61.2
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.4e-153 547.0 464 60.3
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 2.8e-151 539.3 424 62.0
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.8e-151 538.5 435 58.6
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 5.0e-148 528.5 421 63.2
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.4e-142 509.6 430 56.5
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 3.1e-134 482.6 443 53.3
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 1.1e-126 457.6 421 53.9
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.8e-121 440.3 270 76.7
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 8.3e-119 431.4 244 82.4
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.5e-107 394.0 244 79.9
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 3.7e-103 379.4 196 88.3
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.7e-100 370.5 243 77.4
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 1.7e-100 370.5 269 68.8
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 6.2e-98 362.1 453 42.2
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 6.8e-97 358.6 196 81.6
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 8.9e-97 358.2 388 43.0
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 6.0e-93 345.5 508 37.0
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 6.6e-68 262.3 167 76.0
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 3.2e-62 243.4 197 62.9
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 9.3e-54 215.3 169 60.4
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 1.3e-52 211.5 184 59.2
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.2e-48 198.4 246 45.9
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.6e-48 197.2 419 32.5
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 6.1e-45 186.0 145 62.1
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 4.3e-43 179.9 95 80.0
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 1.8e-41 174.5 152 57.2
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 1.5e-40 171.4 195 47.7
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.5e-40 169.9 132 59.1
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 5.9e-40 169.5 113 65.5
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 2.8e-34 150.6 145 53.8
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.3e-31 141.7 96 65.6
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 2.9e-31 140.6 92 68.5
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 1.4e-30 138.3 125 57.6
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 3.3e-27 127.1 129 53.5
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 2.4e-25 120.9 126 50.0
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 3.1e-25 120.6 126 50.8
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.9e-23 114.0 96 55.2
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.8e-17 94.7 67 74.6
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 3.1e-17 94.0 66 65.2
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.1e-14 85.5 65 70.8
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.0e-12 79.0 67 56.7
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.6e-11 74.3 43 76.7
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 1.4e-09 68.6 67 52.2
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 4.1e-09 67.0 55 61.8
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 4.1e-09 67.0 55 61.8
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 5.4e-09 66.6 82 46.3
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 9.1e-09 65.9 53 62.3
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.5e-06 57.8 37 67.6


User provided reference genes

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