Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 0.0e+00 1100.1 554 100.0
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.3e-262 909.4 575 79.3
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 2.6e-255 885.2 575 77.0
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 9.4e-253 876.7 575 76.0
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.6e-244 849.4 575 73.9
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 4.7e-236 821.2 576 72.0
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 2.4e-232 808.9 574 70.9
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.2e-230 802.4 575 69.7
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 8.5e-230 800.4 575 71.0
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.1e-229 800.0 574 70.4
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 3.6e-228 795.0 574 70.9
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 1.8e-227 792.7 575 68.9
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 6.3e-225 784.3 575 68.9
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.2e-223 780.0 575 68.2
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.2e-223 780.0 577 69.2
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.3e-222 776.5 575 67.8
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 3.8e-222 775.0 578 68.9
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.9e-221 772.7 575 67.5
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.2e-220 770.0 575 67.1
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 2.8e-220 768.8 576 67.7
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 3.6e-220 768.5 576 67.5
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.7e-217 758.4 576 66.3
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 1.4e-216 756.5 576 66.1
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 1.8e-216 756.1 586 66.7
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 2.4e-216 755.7 574 66.2
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.4e-216 754.6 576 66.0
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 2.0e-215 752.7 576 66.5
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 4.5e-215 751.5 576 66.7
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.9e-214 748.8 576 65.3
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 6.6e-214 747.7 575 65.6
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 6.6e-214 747.7 575 65.6
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 1.1e-213 746.9 575 65.0
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.2e-212 743.4 572 66.1
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 4.7e-212 741.5 570 65.6
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 1.8e-211 739.6 576 63.5
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.8e-211 739.6 575 64.9
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 8.9e-211 737.3 578 62.3
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 1.1e-208 730.3 575 64.7
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.1e-208 730.3 577 64.6
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 3.2e-208 728.8 594 63.0
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 3.2e-208 728.8 575 65.0
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 7.0e-208 727.6 575 64.3
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 9.2e-208 727.2 575 64.0
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.2e-207 726.9 575 65.4
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 1.6e-207 726.5 576 63.7
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.3e-206 723.4 608 62.3
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 1.7e-206 723.0 576 63.4
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 6.6e-206 721.1 604 61.3
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.5e-205 719.9 575 61.6
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 2.5e-205 719.2 575 64.2
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 7.3e-205 717.6 576 63.5
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 7.3e-205 717.6 576 63.9
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 9.5e-205 717.2 576 62.0
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 8.0e-204 714.1 575 63.0
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.8e-203 713.0 576 63.5
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 8.9e-203 710.7 576 63.9
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.7e-201 706.4 573 61.3
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 2.9e-201 705.7 575 62.1
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.4e-200 703.4 574 60.8
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.4e-200 702.6 574 61.7
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 2.4e-200 702.6 575 63.3
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 3.0e-198 695.7 575 60.3
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 4.3e-197 691.8 517 68.5
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 3.4e-194 682.2 575 61.2
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 3.7e-193 678.7 577 61.2
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 8.3e-193 677.6 575 61.4
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 4.6e-191 671.8 578 61.1
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 8.6e-190 667.5 578 60.7
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.1e-189 667.2 578 60.0
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 4.3e-189 665.2 577 60.1
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 4.3e-189 665.2 607 59.6
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 3.1e-187 659.1 578 60.2
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 8.9e-187 657.5 644 54.0
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 3.8e-185 652.1 576 58.9
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 6.0e-183 644.8 578 59.5
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 3.3e-181 639.0 569 59.4
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 4.3e-181 638.6 569 59.6
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 4.3e-181 638.6 569 59.6
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 2.8e-180 636.0 577 58.8
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 2.8e-180 636.0 577 58.8
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 2.4e-176 622.9 574 54.2
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 2.1e-175 619.8 680 51.2
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 3.9e-174 615.5 502 63.3
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 6.6e-174 614.8 517 60.3
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.1e-173 614.0 496 63.5
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.5e-173 613.6 532 59.2
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 5.6e-173 611.7 429 73.0
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.2e-170 604.0 552 57.2
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.0e-170 603.2 577 53.0
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 3.2e-168 595.9 470 64.7
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 4.2e-168 595.5 440 68.6
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.1e-167 593.2 551 56.3
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 3.5e-167 592.4 547 58.0
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 8.7e-166 587.8 575 51.1
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.1e-155 554.3 394 69.0
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 5.3e-155 552.0 429 66.9
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 4.8e-148 528.9 393 67.4
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 5.5e-144 515.4 493 57.4
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.0e-138 496.9 476 58.2
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.2e-136 489.2 554 47.3
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 3.3e-133 479.6 356 66.6
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 9.1e-131 471.5 582 45.5
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 9.1e-123 444.9 442 52.0
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.2e-119 434.5 367 62.1
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.7e-116 424.1 602 39.9
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 1.2e-114 417.9 297 69.7
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 6.8e-110 402.1 604 39.9
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 5.7e-109 399.1 569 40.4
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.9e-105 386.7 469 48.8
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 4.2e-67 260.0 385 42.6
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 3.3e-64 250.4 279 49.8
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 2.6e-61 240.7 245 51.8
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 2.1e-50 204.5 208 55.3
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 3.0e-49 200.7 520 29.4
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 1.6e-42 178.3 159 61.0
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 2.4e-38 164.5 135 62.2
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 9.0e-38 162.5 99 76.8
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 2.2e-36 157.9 173 51.4
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 1.2e-34 152.1 391 32.5
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.3e-33 147.9 79 89.9
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 5.7e-32 143.3 79 88.6
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.8e-30 138.3 461 24.5
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 3.4e-29 134.0 74 79.7
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 2.9e-28 131.0 119 54.6
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 6.5e-28 129.8 458 24.5
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 9.4e-27 125.9 115 56.5
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 9.4e-27 125.9 115 56.5
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.8e-23 114.4 390 24.6
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.7e-23 114.0 73 78.1
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 5.3e-22 110.2 141 46.1
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 3.8e-20 104.0 60 85.0
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 3.9e-17 94.0 68 64.7
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 1.5e-16 92.0 52 78.8
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 8.5e-12 76.3 109 43.1
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.1e-11 75.9 45 75.6
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 9.4e-11 72.8 51 64.7
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 8.0e-10 69.7 89 46.1
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 3.7e-07 60.8 92 40.2


User provided reference genes

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