Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032708 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 2.6e-62 241.9 121 100.0
CSS0014178 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D108979 8.9e-23 110.5 163 49.1
CSS0020533 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.5e-17 93.2 50 88.0
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.6e-17 91.3 47 91.5
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.6e-17 91.3 47 91.5
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.6e-16 89.7 47 89.4
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 1.1e-15 87.0 98 52.0
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 1.4e-15 86.7 47 83.0
FvH4_6g20890 Fragaria vesca HOM05D003297 ORTHO05D004027 1.8e-15 86.3 61 70.5
Actinidia30893 Actinidia chinensis HOM05D003297 ORTHO05D004027 3.1e-15 85.5 47 80.9
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 8.9e-15 84.0 49 79.6
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.5e-14 83.2 49 79.6
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.5e-14 83.2 49 79.6
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 1.5e-14 83.2 49 79.6
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 1.5e-14 83.2 49 79.6
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 1.5e-14 83.2 49 75.5
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 1.5e-14 83.2 49 79.6
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 1.5e-14 83.2 49 79.6
FAN14G3337 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.0e-14 82.8 48 81.2
TAR376G0821 Trochodendron aralioides HOM05D003297 ORTHO05D004027 2.0e-14 82.8 54 70.4
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 3.4e-14 82.0 72 55.6
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 4.4e-14 81.6 57 61.4
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 4.4e-14 81.6 47 76.6
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 7.5e-14 80.9 47 76.6
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 7.5e-14 80.9 47 74.5
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 7.5e-14 80.9 47 78.7
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 9.8e-14 80.5 47 74.5
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 9.8e-14 80.5 47 74.5
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 9.8e-14 80.5 47 76.6
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 1.3e-13 80.1 49 75.5
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 1.3e-13 80.1 49 73.5
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 2.2e-13 79.3 49 75.5
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 2.2e-13 79.3 49 75.5
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 2.2e-13 79.3 49 75.5
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 2.9e-13 79.0 49 75.5
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 2.9e-13 79.0 47 74.5
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 3.7e-13 78.6 70 55.7
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 3.7e-13 78.6 70 57.1
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 3.7e-13 78.6 49 75.5
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 3.7e-13 78.6 49 73.5
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 4.9e-13 78.2 70 57.1
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 4.9e-13 78.2 70 57.1
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 4.9e-13 78.2 70 57.1
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 4.9e-13 78.2 70 57.1
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 6.4e-13 77.8 70 54.3
arahy.Tifrunner.gnm1.ann1.XD375C Arachis hypogaea HOM05D003297 ORTHO05D004027 8.3e-13 77.4 47 76.6
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 8.3e-13 77.4 47 70.2
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 8.3e-13 77.4 47 72.3
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 8.3e-13 77.4 49 73.5
Zm00001eb121870 Zea mays HOM05D003297 ORTHO05D004027 8.3e-13 77.4 72 54.2
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 1.1e-12 77.0 57 64.9
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 1.1e-12 77.0 49 71.4
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 1.1e-12 77.0 47 70.2
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 1.4e-12 76.6 70 55.7
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 1.4e-12 76.6 47 68.1
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 1.4e-12 76.6 47 70.2
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 1.4e-12 76.6 49 69.4
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 1.4e-12 76.6 57 64.9
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 1.4e-12 76.6 49 69.4
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 1.9e-12 76.3 70 55.7
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 1.9e-12 76.3 47 70.2
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 1.9e-12 76.3 47 70.2
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.9e-12 76.3 47 70.2
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 1.9e-12 76.3 47 70.2
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 1.9e-12 76.3 47 68.1
SGA_v2.0_scaffold857G53675 Striga asiatica HOM05D003297 ORTHO05D004027 1.9e-12 76.3 47 68.1
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 2.4e-12 75.9 70 54.3
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.4e-12 75.9 47 70.2
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 2.4e-12 75.9 46 69.6
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 2.4e-12 75.9 49 69.4
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 2.4e-12 75.9 47 68.1
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 2.4e-12 75.9 47 68.1
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 2.4e-12 75.9 47 68.1
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 3.2e-12 75.5 47 68.1
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 3.2e-12 75.5 49 69.4
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 3.2e-12 75.5 49 67.3
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.2e-12 75.5 57 56.1
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.2e-12 75.5 57 56.1
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 3.2e-12 75.5 49 69.4
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 3.2e-12 75.5 47 70.2
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 3.2e-12 75.5 49 67.3
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 3.2e-12 75.5 49 67.3
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 3.2e-12 75.5 49 69.4
CARHR103230 Cardamine hirsuta HOM05D003297 ORTHO05D004027 4.1e-12 75.1 57 63.2
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 4.1e-12 75.1 57 63.2
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 4.1e-12 75.1 49 67.3
Peaxi162Scf00480g00212 Petunia axillaris HOM05D003297 ORTHO05D004027 4.1e-12 75.1 47 70.2
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 4.1e-12 75.1 57 64.9
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 5.4e-12 74.7 47 66.0
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 5.4e-12 74.7 47 66.0
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 5.4e-12 74.7 47 68.1
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 7.1e-12 74.3 47 70.2
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 7.1e-12 74.3 56 58.9
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 7.1e-12 74.3 49 69.4
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 7.1e-12 74.3 49 69.4
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 7.1e-12 74.3 57 63.2
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 7.1e-12 74.3 49 71.4
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 7.1e-12 74.3 47 72.3
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 7.1e-12 74.3 49 69.4
HanXRQChr17g0550181 Helianthus annuus HOM05D003297 ORTHO05D004027 9.2e-12 73.9 47 63.8
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 9.2e-12 73.9 49 67.3
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 9.2e-12 73.9 47 61.7
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 1.2e-11 73.6 47 70.2
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 1.2e-11 73.6 47 63.8
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 1.2e-11 73.6 47 70.2
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 1.2e-11 73.6 56 57.1
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 1.2e-11 73.6 46 67.4
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 1.6e-11 73.2 49 69.4
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 1.6e-11 73.2 47 66.0
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.6e-11 73.2 47 63.8
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 1.6e-11 73.2 56 57.1
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 2.1e-11 72.8 57 59.6
CAN.G1161.37 Capsicum annuum HOM05D003297 ORTHO05D004027 2.1e-11 72.8 46 65.2
Zm00001eb269870 Zea mays HOM05D003297 ORTHO05D004027 2.1e-11 72.8 56 60.7
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.7e-11 72.4 47 68.1
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 2.7e-11 72.4 47 68.1
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 2.7e-11 72.4 49 61.2
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 2.7e-11 72.4 56 57.1
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 3.5e-11 72.0 49 61.2
arahy.Tifrunner.gnm1.ann1.2MK8LH Arachis hypogaea HOM05D003297 ORTHO05D004027 6.0e-11 71.2 58 60.3
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 6.0e-11 71.2 56 53.6
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 7.8e-11 70.9 47 66.0
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 1.0e-10 70.5 57 59.6
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 1.0e-10 70.5 57 59.6
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 1.0e-10 70.5 57 59.6
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 1.0e-10 70.5 57 59.6
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 1.0e-10 70.5 57 59.6
HanXRQChr17g0534591 Helianthus annuus HOM05D003297 ORTHO05D004027 1.0e-10 70.5 47 61.7
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 1.3e-10 70.1 45 66.7
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 1.7e-10 69.7 47 59.6
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 1.7e-10 69.7 49 63.3
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 3.0e-10 68.9 47 63.8
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 5.1e-10 68.2 47 59.6
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 6.6e-10 67.8 49 57.1
Lsat_1_v5_gn_4_110841 Lactuca sativa HOM05D003297 ORTHO05D004027 6.6e-10 67.8 57 56.1
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 1.1e-09 67.0 47 61.7
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 1.1e-09 67.0 49 63.3
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 1.9e-09 66.2 47 61.7
PSO541G1735 Papaver somniferum HOM05D003297 ORTHO05D004027 1.9e-09 66.2 49 59.2
HanXRQChr17g0534621 Helianthus annuus HOM05D003297 ORTHO05D004027 2.5e-09 65.9 41 65.9
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 2.5e-09 65.9 47 61.7
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 3.3e-09 65.5 36 77.8
PSO017G7282 Papaver somniferum HOM05D003297 ORTHO05D004027 5.6e-09 64.7 43 62.8
arahy.Tifrunner.gnm1.ann1.6W6YW6 Arachis hypogaea HOM05D003297 ORTHO05D004027 7.3e-09 64.3 33 87.9
arahy.Tifrunner.gnm1.ann1.BJ0JYY Arachis hypogaea HOM05D003297 ORTHO05D004027 7.3e-09 64.3 33 87.9
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 7.3e-09 64.3 63 50.8
C09p39960 Brassica napus HOM05D002632 ORTHO05D002881 9.5e-09 63.9 47 68.1
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 9.5e-09 63.9 36 75.0
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 1.2e-08 63.5 49 55.1
Potri.017G066200 Populus trichocarpa HOM05D003297 ORTHO05D004027 4.7e-08 61.6 76 42.1
RcHm_v2.0_Chr2g0174741 Rosa chinensis HOM05D003297 ORTHO05D004027 6.2e-08 61.2 38 76.3
Lsat_1_v5_gn_1_126600 Lactuca sativa HOM05D003297 ORTHO05D004027 3.1e-07 58.9 47 57.4
Oeu050424.1 Olea europaea HOM05D003297 ORTHO05D004027 1.2e-06 57.0 31 83.9
HanXRQChr15g0474981 Helianthus annuus HOM05D003297 ORTHO05D004027 1.5e-06 56.6 41 56.1
QL10p019533 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-06 56.6 39 61.5
BcaC02g10143 Brassica carinata HOM05D002632 ORTHO05D000523 9.9e-06 53.9 78 41.0


User provided reference genes

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