Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.3e-70 266.9 135 100.0
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.3e-70 266.9 135 100.0
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.7e-43 179.5 121 74.4
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 2.3e-43 179.1 122 72.1
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 3.3e-42 175.3 120 72.5
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.6e-41 172.9 120 69.2
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 2.1e-41 172.6 124 71.0
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 5.2e-40 167.9 120 70.0
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 2.6e-39 165.6 121 66.1
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 4.4e-39 164.9 122 68.9
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 4.4e-39 164.9 121 66.9
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 9.9e-39 163.7 121 68.6
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 9.9e-39 163.7 121 66.1
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.7e-38 162.9 120 65.0
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 2.9e-38 162.2 121 64.5
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 6.4e-38 161.0 121 66.1
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.1e-37 160.2 121 63.6
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 1.1e-37 160.2 121 64.5
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.4e-37 159.8 119 68.9
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 2.4e-37 159.1 121 66.1
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.2e-36 156.8 121 62.8
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 2.1e-36 156.0 121 62.8
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 6.0e-36 154.5 117 66.7
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 7.8e-36 154.1 117 63.2
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.7e-35 152.9 94 80.9
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 1.7e-35 152.9 123 61.0
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.3e-35 152.5 121 62.0
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.3e-35 152.5 121 62.0
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 3.0e-35 152.1 119 64.7
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 5.1e-35 151.4 121 62.8
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 6.6e-35 151.0 119 62.2
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 6.6e-35 151.0 117 65.0
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 6.6e-35 151.0 119 61.3
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 8.6e-35 150.6 106 72.6
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.5e-34 149.8 117 63.2
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 1.5e-34 149.8 122 61.5
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 3.3e-34 148.7 119 60.5
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 9.6e-34 147.1 117 61.5
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 1.6e-33 146.4 122 60.7
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 2.1e-33 146.0 122 59.0
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 4.7e-33 144.8 122 60.7
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 6.2e-33 144.4 124 58.1
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 6.2e-33 144.4 120 61.7
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.1e-32 143.7 120 58.3
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 2.4e-32 142.5 110 65.5
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.4e-32 142.5 138 54.3
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 3.1e-32 142.1 117 64.1
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 4.0e-32 141.7 120 55.8
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 6.9e-32 141.0 117 59.8
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 3.4e-31 138.7 119 54.6
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 4.4e-31 138.3 122 56.6
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 9.9e-31 137.1 94 72.3
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 1.3e-30 136.7 94 72.3
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 8.4e-30 134.0 120 55.8
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 9.3e-29 130.6 83 77.1
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.7e-28 129.0 120 56.7
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 2.7e-28 129.0 93 68.8
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 4.6e-28 128.3 117 53.0
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 6.0e-28 127.9 96 66.7
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 1.0e-27 127.1 119 54.6
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.3e-27 126.7 119 54.6
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 6.6e-27 124.4 120 55.0
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 6.6e-27 124.4 119 54.6
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 8.7e-27 124.0 119 55.5
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.5e-26 123.2 101 59.4
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 9.6e-26 120.6 117 53.0
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 3.6e-25 118.6 121 50.4
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 4.8e-25 118.2 97 60.8
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.4e-23 112.1 116 48.3
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 3.2e-21 105.5 75 68.0
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 7.1e-21 104.4 67 73.1
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 9.3e-21 104.0 68 73.5
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 4.6e-20 101.7 69 73.9
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.0e-19 100.5 92 60.9
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.8e-19 99.8 94 50.0
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 3.3e-18 95.5 82 57.3
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 4.3e-18 95.1 72 63.9
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 2.1e-17 92.8 81 53.1
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 4.8e-17 91.7 108 45.4
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 6.2e-17 91.3 108 41.7
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.1e-16 90.5 53 84.9
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.4e-16 90.1 50 82.0
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 2.4e-16 89.4 68 58.8
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.0e-16 88.6 97 45.4
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.2e-15 87.0 50 80.0
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.2e-14 82.8 53 83.0
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.0e-11 73.9 94 45.7
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.7e-09 65.5 51 58.8
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.7e-09 65.5 51 58.8
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 2.4e-08 62.8 88 36.4


User provided reference genes

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