Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032679 Camellia sinensis var. sinensis HOM05D003136 ORTHO05D003562 2.0e-242 842.0 440 100.0
CSS0033262 Camellia sinensis var. sinensis HOM05D003136 ORTHO05D003562 2.8e-228 795.0 425 97.9
CSS0015575 Camellia sinensis var. sinensis HOM05D003136 ORTHO05D003562 1.1e-227 793.1 425 97.6
Actinidia06390 Actinidia chinensis HOM05D003136 ORTHO05D003562 4.2e-155 552.0 426 71.8
Actinidia21356 Actinidia chinensis HOM05D003136 ORTHO05D003562 6.5e-148 528.1 426 68.3
vmacro02370 Vaccinium macrocarpon HOM05D003136 ORTHO05D003562 1.4e-147 526.9 434 68.4
Dinv12100 Davidia involucrata HOM05D003136 ORTHO05D003562 2.7e-146 522.7 426 65.5
QL12p034332 Quercus lobata HOM05D003136 ORTHO05D003562 1.8e-110 403.7 415 55.7
Cfa004879 Carpinus fangiana HOM05D003136 ORTHO05D003562 1.2e-109 401.0 419 54.9
Haze_05118 Corylus avellana HOM05D003136 ORTHO05D003562 1.2e-109 401.0 419 53.9
TAR365G0734 Trochodendron aralioides HOM05D003136 ORTHO05D003562 8.6e-108 394.8 431 56.1
TAR365G0210 Trochodendron aralioides HOM05D003136 ORTHO05D003562 7.3e-107 391.7 431 55.9
Migut.D00028 Erythranthe guttata HOM05D003136 ORTHO05D003562 2.3e-105 386.7 439 52.6
TAR633G0221 Trochodendron aralioides HOM05D003136 ORTHO05D003562 2.9e-103 379.8 427 52.0
Thecc.01G322400 Theobroma cacao HOM05D003136 ORTHO05D003562 6.4e-103 378.6 419 53.5
Prupe.2G042900 Prunus persica HOM05D003136 ORTHO05D003562 5.0e-100 369.0 444 49.8
Duzib138G1355 Durio zibethinus HOM05D003136 ORTHO05D003562 1.5e-99 367.5 419 52.5
CiPaw.08G084600 Carya illinoinensis HOM05D003136 ORTHO05D003562 1.9e-99 367.1 415 52.0
Oeu009105.2 Olea europaea HOM05D003136 ORTHO05D003562 5.6e-99 365.5 458 50.0
Sopen01g030350 Solanum pennellii HOM05D003136 ORTHO05D003562 5.6e-99 365.5 464 49.1
COL.COLO4_23158 Corchorus olitorius HOM05D003136 ORTHO05D003562 3.6e-98 362.8 417 51.8
PGSC0003DMG400017959 Solanum tuberosum HOM05D003136 ORTHO05D003562 3.6e-98 362.8 464 48.9
Duzib133G0059 Durio zibethinus HOM05D003136 ORTHO05D003562 1.8e-97 360.5 419 51.6
Nitab4.5_0001029g0060 Nicotiana tabacum HOM05D003136 ORTHO05D003562 8.9e-97 358.2 504 45.6
Solyc01g068390.3 Solanum lycopersicum HOM05D003136 ORTHO05D003562 3.4e-96 356.3 462 47.4
CiPaw.07G123400 Carya illinoinensis HOM05D003136 ORTHO05D003562 2.2e-95 353.6 416 51.7
FvH4_7g03760 Fragaria vesca HOM05D003136 ORTHO05D003562 4.9e-95 352.4 435 49.9
Lj2C1213G0 Lonicera japonica HOM05D003136 ORTHO05D003562 6.4e-95 352.1 450 52.9
FAN06G2586 Fragaria x ananassa HOM05D003136 ORTHO05D003562 1.4e-94 350.9 435 49.4
Peaxi162Scf00309g00121 Petunia axillaris HOM05D003136 ORTHO05D003562 2.1e-93 347.1 365 56.4
MSTRG.21725 Avicennia marina HOM05D003136 ORTHO05D003562 4.6e-93 345.9 432 48.8
DCAR_005729 Daucus carota HOM05D003136 ORTHO05D003562 7.8e-93 345.1 420 51.0
FAN10G2106 Fragaria x ananassa HOM05D003136 ORTHO05D003562 1.0e-92 344.7 434 49.3
Lalb_Chr15g0077921 Lupinus albus HOM05D003136 ORTHO05D003562 1.0e-92 344.7 419 50.1
Dinv30935 Davidia involucrata HOM05D003136 ORTHO05D003562 5.1e-92 342.4 439 50.6
MD07G1045700 Malus domestica HOM05D003136 ORTHO05D003562 5.1e-92 342.4 452 47.3
RcHm_v2.0_Chr1g0326951 Rosa chinensis HOM05D003136 ORTHO05D003562 3.3e-91 339.7 441 48.5
Sabra02G0166100 Salix brachista HOM05D003136 ORTHO05D003562 4.3e-91 339.3 428 51.9
FAN03G0588 Fragaria x ananassa HOM05D003136 ORTHO05D003562 5.6e-91 339.0 434 48.8
Cpa.g.sc67.79 Carica papaya HOM05D003136 ORTHO05D003562 2.8e-90 336.7 420 50.0
Potri.002G189700 Populus trichocarpa HOM05D003136 ORTHO05D003562 4.7e-90 335.9 415 52.0
Medtr7g110170 Medicago truncatula HOM05D003136 ORTHO05D003562 1.8e-89 334.0 417 50.8
Ciclev10018861m.g Citrus clementina HOM05D003136 ORTHO05D003562 2.3e-89 333.6 432 47.2
Glyma.19G220000 Glycine max HOM05D003136 ORTHO05D003562 4.0e-89 332.8 417 48.7
Manes.05G010800 Manihot esculenta HOM05D003136 ORTHO05D003562 8.9e-89 331.6 415 50.1
CAN.G179.41 Capsicum annuum HOM05D003136 ORTHO05D003562 2.0e-88 330.5 364 54.1
Cc01_g21900 Coffea canephora HOM05D003136 ORTHO05D003562 3.4e-88 329.7 462 46.5
Gorai.008G136100 Gossypium raimondii HOM05D003136 ORTHO05D003562 3.4e-88 329.7 437 46.7
Potri.014G114900 Populus trichocarpa HOM05D003136 ORTHO05D003562 1.3e-87 327.8 421 51.5
Ca_09235_v3 Cicer arietinum L. HOM05D003136 ORTHO05D003562 6.4e-87 325.5 419 49.4
Lalb_Chr04g0260121 Lupinus albus HOM05D003136 ORTHO05D003562 8.3e-87 325.1 419 48.4
Gohir.D12G125100 Gossypium hirsutum HOM05D003136 ORTHO05D003562 3.2e-86 323.2 437 46.5
Gohir.A12G121400 Gossypium hirsutum HOM05D003136 ORTHO05D003562 9.2e-86 321.6 439 45.6
Atru.chr5.904 Acer truncatum HOM05D003136 ORTHO05D003562 2.7e-85 320.1 415 48.0
MD02G1277600 Malus domestica HOM05D003136 ORTHO05D003562 2.7e-85 320.1 466 45.5
GSVIVG01028201001 Vitis vinifera HOM05D003136 ORTHO05D003562 6.0e-85 318.9 400 50.8
Glyma.03G222900 Glycine max HOM05D003136 ORTHO05D003562 2.3e-84 317.0 419 47.0
CANSAT35G1199 Cannabis sativa HOM05D003136 ORTHO05D003562 1.9e-83 313.9 415 50.8
Phvul.001G216400 Phaseolus vulgaris HOM05D003136 ORTHO05D003562 1.9e-83 313.9 418 47.6
QL03p009619 Quercus lobata HOM05D003136 ORTHO05D003562 9.6e-83 311.6 426 47.9
TWI59G0671 Tripterygium wilfordii HOM05D003136 ORTHO05D003562 2.1e-82 310.5 420 47.4
Lalb_Chr18g0046491 Lupinus albus HOM05D003136 ORTHO05D003562 8.1e-82 308.5 419 46.3
TWI14G1445 Tripterygium wilfordii HOM05D003136 ORTHO05D003562 1.8e-81 307.4 420 48.8
Sabra14G0085000 Salix brachista HOM05D003136 ORTHO05D003562 2.4e-81 307.0 427 48.5
TPR.G4074 Trifolium pratense HOM05D003136 ORTHO05D003562 2.4e-81 307.0 417 46.3
CsaV3_7G030450 Cucumis sativus L. HOM05D003136 ORTHO05D003562 5.2e-81 305.8 423 47.3
arahy.Tifrunner.gnm1.ann1.3N4E8I Arachis hypogaea HOM05D003136 ORTHO05D003562 2.9e-79 300.1 417 47.0
Lj1g0020409 Lotus japonicus HOM05D003136 ORTHO05D003562 6.4e-79 298.9 433 44.8
ClCG09G004660 Citrullus lanatus HOM05D003136 ORTHO05D003562 1.1e-78 298.1 420 46.2
Oeu038063.1 Olea europaea HOM05D003136 ORTHO05D003562 1.4e-78 297.7 428 46.5
MELO3C023608.2 Cucumis melo HOM05D003136 ORTHO05D003562 7.1e-78 295.4 415 48.2
MBI18_g09618_MAGBIO Magnolia biondii HOM05D003136 ORTHO05D003562 6.0e-77 292.4 378 50.0
Eucgr.K00591 Eucalyptus grandis HOM05D003136 ORTHO05D003562 2.3e-76 290.4 419 44.6
Sed0000670 Sechium edule HOM05D003136 ORTHO05D003562 2.3e-76 290.4 424 46.5
VMungo1383G3057 Vigna mungo HOM05D003136 ORTHO05D003562 3.9e-76 289.7 418 46.4
arahy.Tifrunner.gnm1.ann1.3UY4XW Arachis hypogaea HOM05D003136 ORTHO05D003562 6.6e-76 288.9 417 46.0
SalBow6G6137 Salvia bowleyana HOM05D003136 ORTHO05D003562 6.6e-76 288.9 450 43.8
Psat3g017600 Pisum sativum HOM05D003136 ORTHO05D003562 1.5e-75 287.7 417 45.1
CSS0040158 Camellia sinensis var. sinensis HOM05D003136 ORTHO05D003562 1.2e-72 278.1 420 46.4
Lalb_Chr06g0167081 Lupinus albus HOM05D003136 ORTHO05D003562 2.6e-72 276.9 454 41.9
Nn4g25407 Nelumbo nucifera HOM05D003136 ORTHO05D003562 5.4e-70 269.2 379 47.8
Hund09694 Selenicereus undatus HOM05D003136 ORTHO05D003562 1.2e-69 268.1 415 45.5
THA.LOC104802129 Tarenaya hassleriana HOM05D003136 ORTHO05D003562 1.6e-69 267.7 437 43.2
PGR142G2717 Punica granatum HOM05D003136 ORTHO05D003562 4.6e-69 266.2 421 43.7
Thecc.05G328100 Theobroma cacao HOM05D003136 ORTHO05D003562 1.0e-68 265.0 427 43.6
Aqoxy2G02557 Aquilegia oxysepala HOM05D003136 ORTHO05D003562 3.9e-68 263.1 345 48.1
COL.COLO4_05504 Corchorus olitorius HOM05D003136 ORTHO05D003562 6.6e-68 262.3 426 41.3
EL10As5g23580 Beta vulgaris HOM05D003136 ORTHO05D003562 4.3e-67 259.6 351 46.4
Nn3g21882 Nelumbo nucifera HOM05D003136 ORTHO05D003562 7.3e-67 258.8 357 48.5
Sc17g0000160 Simmondsia chinensis HOM05D003136 ORTHO05D003562 6.2e-66 255.8 418 45.0
Duzib177G0590 Durio zibethinus HOM05D003136 ORTHO05D003562 1.5e-64 251.1 427 43.3
MD04G1187900 Malus domestica HOM05D003136 ORTHO05D003562 4.5e-64 249.6 427 41.2
Prupe.6G306300 Prunus persica HOM05D003136 ORTHO05D003562 7.6e-64 248.8 425 41.4
RcHm_v2.0_Chr3g0458251 Rosa chinensis HOM05D003136 ORTHO05D003562 1.9e-62 244.2 426 41.5
AUR62024567 Chenopodium quinoa HOM05D003136 ORTHO05D003562 5.4e-62 242.7 365 42.7
AUR62011734 Chenopodium quinoa HOM05D003136 ORTHO05D003562 1.2e-61 241.5 351 43.6
Haze_04003 Corylus avellana HOM05D003136 ORTHO05D003562 2.7e-61 240.4 410 41.2
Sp5g01150 Schrenkiella parvula HOM05D003136 ORTHO05D003562 2.7e-61 240.4 424 42.2
unitig_0.g290 Utricularia gibba HOM05D003136 ORTHO05D003562 1.3e-60 238.0 421 40.9
FAN14G2912 Fragaria x ananassa HOM05D003136 ORTHO05D003562 1.5e-59 234.6 430 41.4
Sed0004994 Sechium edule HOM05D003136 ORTHO05D003562 9.6e-59 231.9 310 48.4
FvH4_6g08350 Fragaria vesca HOM05D003136 ORTHO05D003562 1.6e-58 231.1 426 41.3
FAN05G2780 Fragaria x ananassa HOM05D003136 ORTHO05D003562 3.1e-57 226.9 432 40.3
Thhalv10005791m.g Eutrema salsugineum HOM05D003136 ORTHO05D003562 9.0e-57 225.3 428 38.8
PSO761G0237 Papaver somniferum HOM05D003136 ORTHO05D003562 2.6e-56 223.8 350 43.4
FAN09G0203 Fragaria x ananassa HOM05D003136 ORTHO05D003562 3.4e-56 223.4 430 40.5
Rhsim11G0100200 Rhododendron simsii HOM05D003136 ORTHO05D003562 4.5e-56 223.0 422 39.6
Ah.11g045790 Amaranthus hybridus HOM05D003136 ORTHO05D003562 5.8e-56 222.6 357 44.5
AL5G44980 Arabidopsis lyrata HOM05D003136 ORTHO05D003562 5.8e-56 222.6 427 39.1
Oeu002574.1 Olea europaea HOM05D003136 ORTHO05D003562 1.7e-55 221.1 356 43.8
AT3G62240 Arabidopsis thaliana HOM05D003136 ORTHO05D003562 4.9e-55 219.5 427 38.4
THA.LOC104827656 Tarenaya hassleriana HOM05D003136 ORTHO05D003562 6.5e-55 219.2 420 40.0
Lju99C8T1 Lonicera japonica HOM05D003136 ORTHO05D003562 5.5e-54 216.1 322 45.0
DCAR_001894 Daucus carota HOM05D003136 ORTHO05D003562 9.3e-54 215.3 427 38.6
Potri.013G004200 Populus trichocarpa HOM05D003136 ORTHO05D003562 1.2e-53 214.9 425 40.5
HanXRQChr10g0285601 Helianthus annuus HOM05D003136 ORTHO05D003562 1.6e-53 214.5 419 38.2
A07p25910 Brassica napus HOM05D003136 ORTHO05D003562 3.5e-53 213.4 432 39.1
Sabra13G0003400 Salix brachista HOM05D003136 ORTHO05D003562 7.9e-53 212.2 429 40.6
CARHR172570 Cardamine hirsuta HOM05D003136 ORTHO05D003562 3.0e-52 210.3 429 36.1
Carub.0005s2896 Capsella rubella HOM05D003136 ORTHO05D003562 6.7e-52 209.1 427 37.7
PSO210G0090 Papaver somniferum HOM05D003136 ORTHO05D003562 2.5e-51 207.2 294 44.6
HanXRQChr15g0464391 Helianthus annuus HOM05D003136 ORTHO05D003562 9.6e-51 205.3 421 38.7
CANSAT54G2960 Cannabis sativa HOM05D003136 ORTHO05D003562 1.3e-50 204.9 367 39.2
ECA247G2356 Erigeron canadensis HOM05D003136 ORTHO05D003562 3.7e-50 203.4 435 37.2
BraA07t30238Z Brassica rapa HOM05D003136 ORTHO05D003562 6.2e-50 202.6 427 38.9
BcaC08g45188 Brassica carinata HOM05D003136 ORTHO05D003562 8.2e-50 202.2 426 38.7
C06p28160 Brassica napus HOM05D003136 ORTHO05D003562 8.2e-50 202.2 426 38.7
BolC6t37982H Brassica oleracea HOM05D003136 ORTHO05D003562 8.2e-50 202.2 426 38.7
Manes.09G180200 Manihot esculenta HOM05D003136 ORTHO05D003562 1.1e-49 201.8 429 39.4
FAN02G0529 Fragaria x ananassa HOM05D003136 ORTHO05D003562 2.4e-49 200.7 364 41.8
MBI02_g34310_MAGBIO Magnolia biondii HOM05D003136 ORTHO05D003562 2.0e-48 197.6 295 45.1
Os05g0279400 Oryza sativa ssp. japonica HOM05D003136 ORTHO05D003562 8.4e-47 192.2 436 37.2
Potri.005G004600 Populus trichocarpa HOM05D003136 ORTHO05D003562 1.4e-46 191.4 419 38.4
Zm00001eb007030 Zea mays HOM05D003136 ORTHO05D003562 3.2e-46 190.3 426 37.6
Aqoxy329s002 Aquilegia oxysepala HOM05D003136 ORTHO05D003562 4.2e-46 189.9 193 53.9
CDE08G0964 Ceratophyllum demersum HOM05D003136 ORTHO05D003562 7.2e-46 189.1 423 38.1
ATR0693G331 Amborella trichopoda HOM05D003136 ORTHO05D003562 7.9e-45 185.7 362 42.0
Lsat_1_v5_gn_9_6521 Lactuca sativa HOM05D003136 ORTHO05D003562 2.3e-44 184.1 419 36.5
AL4G46630 Arabidopsis lyrata HOM05D003136 ORTHO05D003562 1.9e-43 181.0 427 35.8
Aa31LG10G16180 Aethionema arabicum HOM05D003136 ORTHO05D003562 2.5e-43 180.6 428 33.2
CDE02G3464 Ceratophyllum demersum HOM05D001037 ORTHO05D003562 1.6e-42 177.9 413 38.3
Carub.0004s2983 Capsella rubella HOM05D003136 ORTHO05D003562 3.7e-42 176.8 424 33.7
vmacro01614 Vaccinium macrocarpon HOM05D003136 ORTHO05D003562 8.2e-42 175.6 524 33.6
Thhalv10001330m.g Eutrema salsugineum HOM05D003136 ORTHO05D003562 4.5e-40 169.9 424 34.4
AT2G47090 Arabidopsis thaliana HOM05D003136 ORTHO05D003562 3.2e-38 163.7 407 35.4
Sp4g29080 Schrenkiella parvula HOM05D003136 ORTHO05D003562 1.8e-36 157.9 418 34.2
Gorai.007G308800 Gossypium raimondii HOM05D003136 ORTHO05D003562 6.3e-34 149.4 401 33.9
BcaB02g07344 Brassica carinata HOM05D003136 ORTHO05D003562 1.2e-32 145.2 246 41.5
CARHR142470 Cardamine hirsuta HOM05D003136 ORTHO05D003562 1.4e-30 138.3 422 32.7
AUR62000461 Chenopodium quinoa HOM05D003136 ORTHO05D003562 1.4e-30 138.3 344 34.6
BcaB02g08802 Brassica carinata HOM05D003136 ORTHO05D003562 1.6e-29 134.8 419 30.3
Actinidia35493 Actinidia chinensis HOM05D003136 ORTHO05D003562 6.1e-29 132.9 228 39.5
RcHm_v2.0_Chr5g0011091 Rosa chinensis HOM05D003136 ORTHO05D003562 6.1e-29 132.9 328 36.3
Hund27715 Selenicereus undatus HOM05D003136 ORTHO05D003562 2.3e-28 131.0 413 31.7
Hund27719 Selenicereus undatus HOM05D003136 ORTHO05D003562 2.3e-28 131.0 413 31.7
FvH4_3g07600 Fragaria vesca HOM05D003136 ORTHO05D003562 3.9e-28 130.2 309 35.0
Gohir.D11G285600 Gossypium hirsutum HOM05D003136 ORTHO05D003562 8.8e-28 129.0 388 33.0
HPP92_002693 Vanilla planifolia HOM05D003136 ORTHO05D003562 1.5e-27 128.3 402 32.6
FAN11G1698 Fragaria x ananassa HOM05D003136 ORTHO05D003562 3.3e-27 127.1 317 35.3
FAN21G2521 Fragaria x ananassa HOM05D003136 ORTHO05D003562 7.4e-27 125.9 309 34.3
BolC4t21714H Brassica oleracea HOM05D003136 ORTHO05D003562 1.7e-26 124.8 415 29.4
BcaC02g12595 Brassica carinata HOM05D003136 ORTHO05D003562 2.8e-26 124.0 415 29.6
C04p00850 Brassica napus HOM05D003136 ORTHO05D003562 6.3e-26 122.9 411 29.0
Os01g0251200 Oryza sativa ssp. japonica HOM05D003136 ORTHO05D003562 1.4e-25 121.7 257 37.4
SHI31903 Sapria himalayana HOM05D003136 ORTHO05D003562 3.1e-25 120.6 286 35.0
EL10Ac4g09540 Beta vulgaris HOM05D003136 ORTHO05D003562 5.3e-25 119.8 339 33.0
FAN16G2453 Fragaria x ananassa HOM05D003136 ORTHO05D003562 1.6e-24 118.2 319 32.9
FAN25G1741 Fragaria x ananassa HOM05D003136 ORTHO05D003562 4.5e-24 116.7 270 35.6
A05p00710 Brassica napus HOM05D003136 ORTHO05D003562 5.9e-24 116.3 413 29.8
Mapoly0106s0017 Marchantia polymorpha HOM05D003136 ORTHO05D003562 2.1e-21 107.8 436 28.7
Pp3c19_13370 Physcomitrium patens HOM05D003136 ORTHO05D003562 5.7e-19 99.8 438 28.8
HPP92_013509 Vanilla planifolia HOM05D003136 ORTHO05D003562 2.2e-18 97.8 209 35.9
Zm00001eb401260 Zea mays HOM05D003136 ORTHO05D003562 1.3e-15 88.6 121 41.3
Zm00001eb401270 Zea mays HOM05D003136 ORTHO05D003562 1.3e-15 88.6 121 41.3
Zm00001eb401280 Zea mays HOM05D003136 ORTHO05D003562 3.8e-15 87.0 161 36.0
ECA246G1933 Erigeron canadensis HOM05D003136 ORTHO05D003562 1.6e-13 81.6 143 38.5
CBR_g4019 Chara braunii HOM05D003136 ORTHO05D003562 8.0e-13 79.3 99 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1657 Anthoceros agrestis HOM05D003136 ORTHO05D003562 2.0e-11 74.7 117 35.9
BcaB02g07345 Brassica carinata HOM05D003136 ORTHO05D003562 3.4e-11 73.9 144 39.6
Gohir.A11G275200 Gossypium hirsutum HOM05D003136 ORTHO05D003562 1.8e-09 68.2 134 41.0
HPP92_013510 Vanilla planifolia HOM05D003136 ORTHO05D003562 1.6e-08 65.1 161 36.0
SMO367G0009 Selaginella moellendorffii HOM05D003136 ORTHO05D003562 3.5e-08 63.9 269 27.5


User provided reference genes

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