Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 2310.4 1166 100.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1999.2 1167 87.9
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1950.6 1174 84.3
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1934.5 1213 83.0
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1928.7 1209 82.8
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1927.9 1173 83.5
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1927.5 1173 83.2
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1927.1 1172 83.8
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1926.8 1172 83.7
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1921.4 1173 83.5
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1914.8 1173 83.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1909.8 1173 83.8
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1901.3 1183 82.1
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1899.0 1172 82.8
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1896.3 1172 82.5
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1894.0 1172 82.8
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1891.7 1174 82.5
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1887.1 1173 82.4
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1884.8 1183 81.9
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1884.4 1174 81.9
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1882.1 1174 81.8
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1882.1 1172 82.6
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1879.0 1174 81.8
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1879.0 1173 82.3
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1869.7 1221 79.3
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1867.8 1217 79.5
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1865.9 1221 79.2
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1863.2 1173 81.4
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1860.9 1174 81.2
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1860.1 1221 79.1
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1854.0 1170 81.5
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1848.6 1173 80.2
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1843.9 1196 79.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1843.2 1173 80.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1835.8 1173 80.6
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1835.8 1169 80.8
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1832.4 1173 80.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1832.0 1227 77.0
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1831.6 1229 77.4
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1828.5 1173 80.5
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1827.0 1209 77.7
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1827.0 1196 78.8
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1826.6 1209 77.8
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1825.1 1174 79.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1823.5 1177 80.1
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1822.0 1174 79.6
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1819.7 1174 79.6
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1814.3 1174 79.3
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1811.6 1171 80.0
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1811.2 1175 78.4
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1808.9 1178 78.4
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1807.3 1171 78.7
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1803.5 1170 78.9
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1803.1 1172 79.3
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1801.9 1175 78.5
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1801.6 1171 78.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1798.5 1160 79.5
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1795.4 1174 78.7
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1794.2 1172 78.8
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1793.9 1172 78.8
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1789.6 1203 77.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1785.0 1171 78.3
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1783.5 1168 77.4
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1782.7 1203 76.6
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1781.1 1173 77.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1780.4 1172 78.1
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1779.2 1168 79.5
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1774.2 1172 77.6
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1772.3 1175 77.8
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1770.0 1176 78.1
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1769.2 1232 74.4
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1768.1 1176 77.6
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1766.9 1190 78.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1765.4 1175 76.8
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1765.0 1173 77.8
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1764.6 1209 75.9
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1762.3 1176 77.4
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1758.0 1173 77.2
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1752.3 1173 77.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1751.9 1172 76.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1747.6 1171 77.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1746.9 1181 76.7
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1746.9 1174 76.3
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1745.7 1233 74.0
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1745.3 1172 76.4
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1741.1 1172 76.3
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1741.1 1232 73.9
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1740.7 1177 77.5
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1739.5 1172 76.9
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1737.6 1173 76.6
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1171 77.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1736.1 1174 75.2
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1174 76.3
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1731.8 1183 75.4
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1729.1 1101 80.7
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1726.8 1176 76.2
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1724.9 1173 76.0
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1173 75.4
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1721.1 1172 75.4
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1717.6 1172 75.3
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1717.6 1187 76.7
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1715.7 1172 75.4
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1702.6 1072 80.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1179 74.7
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1150 76.7
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1691.4 1176 76.1
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1691.4 1200 75.1
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1689.1 1173 74.8
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1688.3 1182 74.5
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1676.8 1176 75.3
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1654.4 1204 73.2
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1632.5 947 87.3
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1624.4 1148 73.7
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1615.1 972 87.9
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1612.8 1175 71.3
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1602.4 1171 70.7
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1596.6 1171 70.5
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1596.3 1185 70.3
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1590.1 1181 70.4
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1560.8 1110 74.2
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1524.6 1173 69.3
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1519.2 947 81.7
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1462.6 1035 75.2
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1440.2 1181 66.3
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1403.3 963 77.5
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1379.0 970 73.8
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1370.1 946 75.3
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1350.1 960 75.3
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1314.3 888 76.8
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1293.5 1173 61.2
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1255.0 815 79.9
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1211.1 813 77.6
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1204.1 806 77.7
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1163.3 808 75.6
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 0.0e+00 1119.0 727 80.1
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1104.7 1163 56.7
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 3.6e-294 1015.4 1172 48.9
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.8e-290 1003.0 1204 47.9
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 5.3e-282 974.9 538 90.5
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.2e-267 926.4 719 69.0
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.6e-265 920.2 603 79.4
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.8e-196 689.1 432 79.6
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 6.1e-169 599.4 360 82.2
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 8.5e-163 578.9 893 44.3
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.6e-148 531.6 307 83.7
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.1e-138 498.8 303 79.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.9e-138 498.0 303 79.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 7.5e-135 486.1 613 48.3
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 6.4e-126 456.4 286 82.5
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 9.5e-122 442.6 808 35.4
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 2.8e-113 414.5 1317 28.5
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 1.9e-101 375.2 224 81.2
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.0e-91 342.8 511 44.0
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.9e-90 338.6 197 85.3
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 4.9e-86 323.9 205 78.5
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 5.4e-85 320.5 283 63.6
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 4.3e-82 310.8 182 82.4
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.9e-74 285.4 258 62.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 2.4e-72 278.5 188 71.3
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 2.3e-67 261.9 179 76.0
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 8.2e-65 253.4 144 87.5
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 3.2e-61 241.5 187 69.0
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 4.5e-55 221.1 152 73.7
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 5.5e-53 214.2 130 85.4
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.2e-47 196.4 118 84.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 4.5e-47 194.5 125 78.4
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 2.5e-37 162.2 92 90.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 3.0e-27 128.6 86 75.6
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 3.0e-27 128.6 91 70.3
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 3.0e-27 128.6 91 70.3
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 5.6e-21 107.8 83 68.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.1e-20 105.9 78 71.8
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 4.4e-18 98.2 60 71.7
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 2.2e-17 95.9 47 85.1
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 2.9e-17 95.5 59 76.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 5.4e-16 91.3 140 43.6
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 7.0e-16 90.9 81 50.6
Cc04_g15210 Coffea canephora HOM05D003952 ORTHO05D154321 5.0e-06 58.2 25 92.0


User provided reference genes

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