Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032668 Camellia sinensis var. sinensis HOM05D001074 ORTHO05D001188 3.9e-55 218.0 119 100.0
Actinidia27308 Actinidia chinensis HOM05D001074 ORTHO05D001188 3.7e-21 105.1 119 54.6
Hma1.2p1_0440F.1_g153580 Hydrangea macrophylla HOM05D001074 ORTHO05D001188 5.3e-20 101.3 131 53.4
vmacro13882 Vaccinium macrocarpon HOM05D001074 ORTHO05D001188 4.5e-19 98.2 116 52.6
Atru.chr9.1941 Acer truncatum HOM05D001074 ORTHO05D001188 1.6e-16 89.7 121 52.9
Dinv37499 Davidia involucrata HOM05D001074 ORTHO05D001188 5.1e-15 84.7 107 53.3
GSVIVG01038564001 Vitis vinifera HOM05D001074 ORTHO05D001188 8.8e-15 84.0 123 46.3
TAR374G1588 Trochodendron aralioides HOM05D001074 ORTHO05D001188 4.3e-14 81.6 133 45.1
QL02p029619 Quercus lobata HOM05D001074 ORTHO05D001188 7.4e-14 80.9 115 47.8
Rhsim07G0080900 Rhododendron simsii HOM05D001074 ORTHO05D001188 2.8e-13 79.0 160 37.5
GSVIVG01019595001 Vitis vinifera HOM05D001074 ORTHO05D001188 2.8e-13 79.0 116 50.0
PGR042G1177 Punica granatum HOM05D001074 ORTHO05D001188 8.2e-13 77.4 122 43.4
Potri.001G088100 Populus trichocarpa HOM05D001074 ORTHO05D001188 1.1e-12 77.0 118 46.6
Manes.01G184800 Manihot esculenta HOM05D001074 ORTHO05D001188 3.1e-12 75.5 126 44.4
Cfa016241 Carpinus fangiana HOM05D001074 ORTHO05D001188 5.3e-12 74.7 132 42.4
Potri.003G142800 Populus trichocarpa HOM05D001074 ORTHO05D001188 5.3e-12 74.7 117 43.6
Potri.012G016900 Populus trichocarpa HOM05D001074 ORTHO05D001188 6.9e-12 74.3 124 41.9
Ciclev10021975m.g Citrus clementina HOM05D001074 ORTHO05D001188 9.1e-12 73.9 95 50.5
Dinv29266 Davidia involucrata HOM05D001074 ORTHO05D001188 1.2e-11 73.6 126 44.4
CiPaw.05G197800 Carya illinoinensis HOM05D001074 ORTHO05D001188 1.5e-11 73.2 133 42.1
Sabra12G0015500 Salix brachista HOM05D001074 ORTHO05D001188 1.5e-11 73.2 103 45.6
TAR636G2195 Trochodendron aralioides HOM05D001074 ORTHO05D001188 1.5e-11 73.2 109 48.6
MD07G1293000 Malus domestica HOM05D001074 ORTHO05D001188 2.0e-11 72.8 133 41.4
Migut.E00736 Erythranthe guttata HOM05D001074 ORTHO05D001188 2.6e-11 72.4 123 42.3
Thecc.03G200600 Theobroma cacao HOM05D001074 ORTHO05D001188 3.4e-11 72.0 103 47.6
CiPaw.11G117300 Carya illinoinensis HOM05D001074 ORTHO05D001188 4.5e-11 71.6 115 43.5
Cpa.g.sc3.99 Carica papaya HOM05D001074 ORTHO05D001188 5.9e-11 71.2 103 48.5
Cpa.g.sc79.4 Carica papaya HOM05D001074 ORTHO05D001188 1.0e-10 70.5 120 42.5
Haze_00199 Corylus avellana HOM05D001074 ORTHO05D001188 1.0e-10 70.5 132 38.6
FvH4_7g31960 Fragaria vesca HOM05D001074 ORTHO05D001188 1.0e-10 70.5 132 39.4
FAN03G0931 Fragaria x ananassa HOM05D001074 ORTHO05D001188 1.0e-10 70.5 132 39.4
COL.COLO4_16786 Corchorus olitorius HOM05D001074 ORTHO05D001188 1.3e-10 70.1 102 46.1
RcHm_v2.0_Chr1g0381461 Rosa chinensis HOM05D001074 ORTHO05D001188 1.3e-10 70.1 132 40.2
TWI39G0168 Tripterygium wilfordii HOM05D001074 ORTHO05D001188 1.3e-10 70.1 134 42.5
Duzib084G1329 Durio zibethinus HOM05D001074 ORTHO05D001188 2.9e-10 68.9 103 46.6
FAN10G1322 Fragaria x ananassa HOM05D001074 ORTHO05D001188 2.9e-10 68.9 132 38.6
FAN10G3632 Fragaria x ananassa HOM05D001074 ORTHO05D001188 2.9e-10 68.9 132 38.6
Hma1.2p1_1507F.1_g287650 Hydrangea macrophylla HOM05D001074 ORTHO05D001188 2.9e-10 68.9 137 42.3
QL09p008639 Quercus lobata HOM05D001074 ORTHO05D001188 2.9e-10 68.9 137 38.7
Duzib205G0639 Durio zibethinus HOM05D001074 ORTHO05D001188 3.8e-10 68.6 104 46.2
FAN01G2022 Fragaria x ananassa HOM05D001074 ORTHO05D001188 3.8e-10 68.6 132 39.4
FAN06G1154 Fragaria x ananassa HOM05D001074 ORTHO05D001188 3.8e-10 68.6 132 39.4
Gorai.003G121700 Gossypium raimondii HOM05D001074 ORTHO05D001188 6.5e-10 67.8 124 42.7
Manes.02G006800 Manihot esculenta HOM05D001074 ORTHO05D001188 6.5e-10 67.8 115 40.9
Manes.05G190200 Manihot esculenta HOM05D001074 ORTHO05D001188 8.5e-10 67.4 104 44.2
CANSAT21G0656 Cannabis sativa HOM05D001074 ORTHO05D001188 1.1e-09 67.0 134 38.8
Duzib068G0581 Durio zibethinus HOM05D001074 ORTHO05D001188 1.1e-09 67.0 89 42.7
Eucgr.K00391 Eucalyptus grandis HOM05D001074 ORTHO05D001188 1.1e-09 67.0 134 40.3
AUR62006080 Chenopodium quinoa HOM05D001074 ORTHO05D001188 1.4e-09 66.6 105 43.8
Eucgr.E00723 Eucalyptus grandis HOM05D001074 ORTHO05D001188 1.4e-09 66.6 117 36.8
Lj1g0025836 Lotus japonicus HOM05D001074 ORTHO05D001188 1.4e-09 66.6 132 37.9
Prupe.2G312800 Prunus persica HOM05D001074 ORTHO05D001188 1.4e-09 66.6 133 39.1
Sed0019067 Sechium edule HOM05D001074 ORTHO05D001188 1.4e-09 66.6 134 38.8
Thecc.03G302400 Theobroma cacao HOM05D001074 ORTHO05D001188 1.9e-09 66.2 99 43.4
Gohir.A03G051700 Gossypium hirsutum HOM05D001074 ORTHO05D001188 2.5e-09 65.9 123 40.7
PGR142G0617 Punica granatum HOM05D001074 ORTHO05D001188 2.5e-09 65.9 137 38.0
CsaV3_3G019770 Cucumis sativus L. HOM05D001074 ORTHO05D001188 3.2e-09 65.5 143 38.5
MELO3C008503.2 Cucumis melo HOM05D001074 ORTHO05D001188 4.2e-09 65.1 143 38.5
TAR633G2202 Trochodendron aralioides HOM05D001074 ORTHO05D002629 4.2e-09 65.1 108 45.4
MSTRG.8646 Avicennia marina HOM05D001074 ORTHO05D001188 5.5e-09 64.7 136 36.8
CiPaw.06G045300 Carya illinoinensis HOM05D001074 ORTHO05D001188 5.5e-09 64.7 109 40.4
Gohir.D03G115500 Gossypium hirsutum HOM05D001074 ORTHO05D001188 5.5e-09 64.7 123 39.8
AUR62019414 Chenopodium quinoa HOM05D001074 ORTHO05D001188 7.2e-09 64.3 121 40.5
Ca_16718_v3 Cicer arietinum L. HOM05D001074 ORTHO05D001188 7.2e-09 64.3 133 37.6
Prupe.5G124400 Prunus persica HOM05D001074 ORTHO05D001188 7.2e-09 64.3 97 47.4
Migut.F00202 Erythranthe guttata HOM05D001074 ORTHO05D001188 9.4e-09 63.9 133 36.8
TAR371G1026 Trochodendron aralioides HOM05D001074 ORTHO05D001188 9.4e-09 63.9 90 47.8
Lalb_Chr08g0240151 Lupinus albus HOM05D001074 ORTHO05D001188 1.2e-08 63.5 132 37.9
Nn1g00291 Nelumbo nucifera HOM05D001074 ORTHO05D001188 1.6e-08 63.2 121 40.5
Cc08_g16380 Coffea canephora HOM05D001074 ORTHO05D001188 2.1e-08 62.8 115 36.5
COL.COLO4_10744 Corchorus olitorius HOM05D001074 ORTHO05D001188 2.1e-08 62.8 89 43.8
CSS0024412 Camellia sinensis var. sinensis HOM05D001074 ORTHO05D001188 2.7e-08 62.4 139 39.6
Eucgr.E01020 Eucalyptus grandis HOM05D001074 ORTHO05D001188 3.6e-08 62.0 114 35.1
RcHm_v2.0_Chr7g0186151 Rosa chinensis HOM05D001074 ORTHO05D001188 3.6e-08 62.0 116 42.2
Sabra03G0103400 Salix brachista HOM05D001074 ORTHO05D001188 3.6e-08 62.0 119 40.3
EL10Ac3g05268 Beta vulgaris HOM05D001074 ORTHO05D001188 4.7e-08 61.6 124 38.7
Sc13g0009950 Simmondsia chinensis HOM05D001074 ORTHO05D001188 4.7e-08 61.6 128 40.6
CSS0010942 Camellia sinensis var. sinensis HOM05D001074 ORTHO05D001188 7.9e-08 60.8 139 38.1
Psat5g076160 Pisum sativum HOM05D001074 ORTHO05D001188 7.9e-08 60.8 114 38.6
arahy.Tifrunner.gnm1.ann1.ADUU08 Arachis hypogaea HOM05D001074 ORTHO05D001188 1.0e-07 60.5 132 36.4
arahy.Tifrunner.gnm1.ann1.T964H7 Arachis hypogaea HOM05D001074 ORTHO05D001188 1.0e-07 60.5 132 36.4
Glyma.14G138980 Glycine max HOM05D001074 ORTHO05D001188 1.0e-07 60.5 134 35.1
Lj8A204G65 Lonicera japonica HOM05D001074 ORTHO05D001188 1.0e-07 60.5 97 46.4
BcaB01g00730 Brassica carinata HOM05D001074 ORTHO05D001188 1.4e-07 60.1 123 43.1
ClCG05G009010 Citrullus lanatus HOM05D001074 ORTHO05D001188 1.4e-07 60.1 136 39.0
FAN08G3059 Fragaria x ananassa HOM05D001074 ORTHO05D001188 1.4e-07 60.1 117 40.2
AT3G49290 Arabidopsis thaliana HOM05D001074 ORTHO05D001188 1.8e-07 59.7 128 43.0
CANSAT21G0449 Cannabis sativa HOM05D001074 ORTHO05D001188 1.8e-07 59.7 99 38.4
Nn3g18953 Nelumbo nucifera HOM05D001074 ORTHO05D001188 1.8e-07 59.7 116 41.4
Gohir.A12G249100 Gossypium hirsutum HOM05D001074 ORTHO05D001188 2.3e-07 59.3 129 41.9
Atru.chr12.2240 Acer truncatum HOM05D001074 ORTHO05D001188 3.0e-07 58.9 108 38.0
Gohir.A12G238300 Gossypium hirsutum HOM05D001074 ORTHO05D001188 3.0e-07 58.9 90 42.2
Gorai.008G256500 Gossypium raimondii HOM05D001074 ORTHO05D001188 3.0e-07 58.9 101 40.6
Actinidia08659 Actinidia chinensis HOM05D001074 ORTHO05D001188 3.9e-07 58.5 112 41.1
MSTRG.13736 Avicennia marina HOM05D001074 ORTHO05D001188 3.9e-07 58.5 119 38.7
Medtr3g091760 Medicago truncatula HOM05D001074 ORTHO05D001188 3.9e-07 58.5 113 37.2
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 5.1e-07 58.2 64 53.1
Aqoxy7G00062 Aquilegia oxysepala HOM05D001074 ORTHO05D001188 6.7e-07 57.8 137 40.9
C08p24290 Brassica napus HOM05D001074 ORTHO05D001188 6.7e-07 57.8 125 42.4
BolC8t50045H Brassica oleracea HOM05D001074 ORTHO05D001188 6.7e-07 57.8 125 42.4
ECA233G1696 Erigeron canadensis HOM05D001074 ORTHO05D001188 6.7e-07 57.8 134 38.1
FAN13G1194 Fragaria x ananassa HOM05D001074 ORTHO05D001188 6.7e-07 57.8 117 40.2
Gohir.D12G249900 Gossypium hirsutum HOM05D001074 ORTHO05D001188 6.7e-07 57.8 124 41.9
Gorai.008G268000 Gossypium raimondii HOM05D001074 ORTHO05D001188 6.7e-07 57.8 124 41.9
MD14G1132900 Malus domestica HOM05D001074 ORTHO05D001188 6.7e-07 57.8 98 42.9
SalBow4G3282 Salvia bowleyana HOM05D001074 ORTHO05D001188 6.7e-07 57.8 133 36.1
Hund11651 Selenicereus undatus HOM05D001074 ORTHO05D001188 6.7e-07 57.8 129 37.2
AL5G29020 Arabidopsis lyrata HOM05D001074 ORTHO05D001188 8.8e-07 57.4 133 41.4
Thhalv10010561m.g Eutrema salsugineum HOM05D001074 ORTHO05D001188 8.8e-07 57.4 105 44.8
Sp5g12810 Schrenkiella parvula HOM05D001074 ORTHO05D001188 8.8e-07 57.4 133 41.4
BcaC07g39398 Brassica carinata HOM05D001074 ORTHO05D001188 1.1e-06 57.0 122 42.6
Carub.0005s1549 Capsella rubella HOM05D001074 ORTHO05D001188 1.1e-06 57.0 133 41.4
Ciclev10021055m.g Citrus clementina HOM05D001074 ORTHO05D001188 1.1e-06 57.0 132 34.8
Glyma.04G234500 Glycine max HOM05D001074 ORTHO05D001188 1.1e-06 57.0 132 35.6
MBI06_g36470_MAGBIO Magnolia biondii HOM05D001074 ORTHO05D001188 1.1e-06 57.0 127 39.4
Oeu060993.1 Olea europaea HOM05D001074 ORTHO05D001188 1.1e-06 57.0 132 34.8
Sed0019891 Sechium edule HOM05D001074 ORTHO05D001188 1.5e-06 56.6 138 37.0
vmacro06391 Vaccinium macrocarpon HOM05D001074 ORTHO05D001188 1.5e-06 56.6 126 41.3
Ah.07g205520 Amaranthus hybridus HOM05D001074 ORTHO05D001188 2.0e-06 56.2 103 38.8
Lalb_Chr11g0066971 Lupinus albus HOM05D001074 ORTHO05D001188 2.6e-06 55.8 132 34.1
MD01G1222400 Malus domestica HOM05D001074 ORTHO05D001188 2.6e-06 55.8 133 36.8
Psat6g034880 Pisum sativum HOM05D001074 ORTHO05D001188 2.6e-06 55.8 133 34.6
CAN.G567.31 Capsicum annuum HOM05D001074 ORTHO05D001188 3.3e-06 55.5 120 35.8
Oeu023661.1 Olea europaea HOM05D001074 ORTHO05D001188 3.3e-06 55.5 132 34.1
Gorai.003G074200 Gossypium raimondii HOM05D001074 ORTHO05D001188 4.4e-06 55.1 86 48.8
Solyc08g082710.3 Solanum lycopersicum HOM05D001074 ORTHO05D001188 4.4e-06 55.1 110 34.5
TPR.G18774 Trifolium pratense HOM05D001074 ORTHO05D001188 4.4e-06 55.1 118 35.6
A06p18490 Brassica napus HOM05D001074 ORTHO05D001188 5.7e-06 54.7 117 41.9
Ca_12785_v3 Cicer arietinum L. HOM05D001074 ORTHO05D001188 5.7e-06 54.7 132 34.1
Peaxi162Scf00074g00545 Petunia axillaris HOM05D001074 ORTHO05D001188 5.7e-06 54.7 122 32.8
Sopen08g030940 Solanum pennellii HOM05D001074 ORTHO05D001188 5.7e-06 54.7 100 37.0
VMungo1309G0031 Vigna mungo HOM05D001074 ORTHO05D001188 5.7e-06 54.7 134 33.6
Glyma.06G130100 Glycine max HOM05D001074 ORTHO05D001188 7.4e-06 54.3 133 34.6
Gohir.D12G239400 Gossypium hirsutum HOM05D001074 ORTHO05D001188 7.4e-06 54.3 101 38.6
HanXRQChr07g0205121 Helianthus annuus HOM05D001074 ORTHO05D001188 7.4e-06 54.3 141 36.9
Actinidia22741 Actinidia chinensis HOM05D001074 ORTHO05D055842 9.7e-06 53.9 61 50.8
BraA06t24927Z Brassica rapa HOM05D001074 ORTHO05D001188 9.7e-06 53.9 125 40.8
Gohir.D03G087800 Gossypium hirsutum HOM05D001074 ORTHO05D001188 9.7e-06 53.9 84 46.4
Lsat_1_v5_gn_8_5340 Lactuca sativa HOM05D001074 ORTHO05D001188 9.7e-06 53.9 135 34.1


User provided reference genes

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