Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.4e-40 169.1 79 100.0
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.2e-14 82.0 66 66.7
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 2.4e-13 78.6 52 71.2
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 9.3e-13 76.6 66 59.1
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 2.7e-12 75.1 67 58.2
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 6.0e-12 73.9 68 57.4
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.3e-11 72.8 70 54.3
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.3e-11 72.0 73 52.1
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 2.3e-11 72.0 74 52.7
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 3.0e-11 71.6 78 48.7
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.9e-11 71.2 68 54.4
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 3.9e-11 71.2 74 52.7
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 6.7e-11 70.5 81 51.9
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.5e-10 69.3 68 54.4
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.5e-10 69.3 71 52.1
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.5e-10 69.3 71 54.9
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.5e-10 69.3 71 54.9
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 1.5e-10 69.3 57 63.2
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.9e-10 68.9 68 52.9
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.5e-10 68.6 71 50.7
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 3.3e-10 68.2 49 65.3
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.3e-10 68.2 71 50.7
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.3e-10 68.2 75 50.7
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 4.3e-10 67.8 71 49.3
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 5.6e-10 67.4 85 44.7
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.6e-10 67.4 71 53.5
Solyc02g070820.1 Solanum lycopersicum HOM05D024954 ORTHO05D006663 5.6e-10 67.4 57 61.4
Sopen02g019930 Solanum pennellii HOM05D024954 ORTHO05D018132 5.6e-10 67.4 57 61.4
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 7.4e-10 67.0 47 63.8
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 9.6e-10 66.6 50 58.0
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.6e-09 65.9 45 66.7
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.6e-09 65.9 52 53.8
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 1.6e-09 65.9 64 53.1
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 1.6e-09 65.9 52 57.7
PGSC0003DMG400008315 Solanum tuberosum HOM05D024954 ORTHO05D018132 2.1e-09 65.5 57 59.6
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 2.8e-09 65.1 62 51.6
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 3.7e-09 64.7 44 61.4
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 6.2e-09 63.9 77 44.2
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 8.1e-09 63.5 70 45.7
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 8.1e-09 63.5 70 45.7
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 8.1e-09 63.5 62 53.2
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.1e-08 63.2 66 51.5
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 1.1e-08 63.2 63 52.4
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.8e-08 62.4 77 44.2
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.4e-08 62.0 69 46.4
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 2.4e-08 62.0 52 51.9
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 3.1e-08 61.6 63 52.4
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.1e-08 61.6 63 52.4
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.1e-08 61.6 63 52.4
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 6.9e-08 60.5 68 47.1
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 6.9e-08 60.5 74 48.6
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 9.0e-08 60.1 65 47.7
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 9.0e-08 60.1 67 49.3
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.5e-07 59.3 53 54.7
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.0e-07 58.9 50 58.0
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 2.0e-07 58.9 60 48.3
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.6e-07 58.5 53 54.7
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.6e-07 58.5 53 54.7
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 2.6e-07 58.5 49 55.1
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 2.6e-07 58.5 65 46.2
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 3.4e-07 58.2 81 42.0
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 3.4e-07 58.2 67 43.3
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 4.5e-07 57.8 62 46.8
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 5.8e-07 57.4 67 44.8
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 5.8e-07 57.4 58 51.7
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 7.6e-07 57.0 66 45.5
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.9e-07 56.6 67 43.3
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 9.9e-07 56.6 67 43.3
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 9.9e-07 56.6 37 64.9
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 1.3e-06 56.2 43 55.8
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 1.7e-06 55.8 61 49.2
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.7e-06 55.8 67 43.3
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 2.2e-06 55.5 68 42.6
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 2.9e-06 55.1 67 41.8
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 3.8e-06 54.7 70 44.3
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 3.8e-06 54.7 73 41.1
PSO541G4839 Papaver somniferum HOM05D006911 ORTHO05D006663 3.8e-06 54.7 40 65.0
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 3.8e-06 54.7 75 40.0
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 3.8e-06 54.7 43 58.1
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 3.8e-06 54.7 67 43.3
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 4.9e-06 54.3 70 44.3
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 4.9e-06 54.3 46 50.0
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 4.9e-06 54.3 59 49.2
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 4.9e-06 54.3 59 49.2
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 6.4e-06 53.9 59 49.2
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 6.4e-06 53.9 53 49.1
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 8.4e-06 53.5 49 49.0


User provided reference genes

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