Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.5e-59 229.9 114 100.0
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.2e-50 203.0 146 74.7
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.4e-46 188.7 94 96.8
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.5e-45 184.9 146 67.1
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 2.3e-44 182.2 146 65.8
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.5e-43 179.5 146 64.4
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.5e-43 179.5 146 65.1
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.9e-43 179.1 146 64.4
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.9e-43 179.1 146 64.4
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.5e-43 178.7 146 65.8
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 4.3e-43 177.9 146 63.7
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 4.3e-43 177.9 146 63.7
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 7.3e-43 177.2 146 64.4
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.2e-42 176.4 146 63.0
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 2.1e-42 175.6 146 62.3
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 4.7e-42 174.5 146 63.0
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 4.7e-42 174.5 146 63.0
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 6.2e-42 174.1 148 62.8
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 8.1e-42 173.7 146 63.7
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 8.1e-42 173.7 146 63.0
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.1e-41 173.3 146 62.3
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.3e-41 172.2 137 67.2
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 2.3e-41 172.2 147 63.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.1e-41 171.8 146 61.0
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 3.1e-41 171.8 146 61.0
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 4.0e-41 171.4 143 62.9
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 4.0e-41 171.4 143 62.2
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.0e-41 171.4 146 62.3
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 6.8e-41 170.6 146 62.3
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.9e-41 170.2 146 61.0
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.2e-40 169.9 146 63.0
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 1.2e-40 169.9 147 62.6
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.2e-40 169.9 146 63.0
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.5e-40 169.5 148 61.5
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.5e-40 169.5 146 62.3
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.5e-40 169.5 143 61.5
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 2.6e-40 168.7 150 62.0
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 3.4e-40 168.3 147 62.6
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 4.4e-40 167.9 147 61.9
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 4.4e-40 167.9 146 62.3
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 7.5e-40 167.2 146 60.3
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 9.8e-40 166.8 147 61.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.3e-39 166.4 146 61.0
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.7e-39 166.0 145 57.9
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.2e-39 165.6 147 60.5
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.2e-39 165.6 148 60.8
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 2.9e-39 165.2 143 60.8
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.9e-39 165.2 146 58.2
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 3.7e-39 164.9 146 61.0
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 6.4e-39 164.1 148 62.8
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 8.3e-39 163.7 147 61.2
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 8.3e-39 163.7 147 61.2
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.4e-38 162.9 146 58.9
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 1.9e-38 162.5 147 58.5
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 2.4e-38 162.2 151 58.3
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.4e-38 162.2 148 59.5
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 4.1e-38 161.4 97 81.4
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 4.1e-38 161.4 146 58.2
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.4e-38 161.0 148 58.1
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.1e-38 160.6 147 59.2
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 7.1e-38 160.6 147 59.2
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 7.1e-38 160.6 146 58.9
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 7.1e-38 160.6 146 58.9
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 9.2e-38 160.2 146 58.2
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 9.2e-38 160.2 146 57.5
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 9.2e-38 160.2 148 58.8
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.2e-37 159.8 146 58.2
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.2e-37 159.8 146 58.2
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.6e-37 159.5 146 57.5
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 3.5e-37 158.3 146 58.2
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.5e-37 158.3 148 60.8
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 4.6e-37 157.9 147 58.5
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 7.8e-37 157.1 146 58.2
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.8e-37 157.1 97 80.4
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.0e-36 156.8 143 57.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.3e-36 156.4 146 56.8
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.7e-36 156.0 150 60.0
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.3e-36 155.6 146 56.2
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.3e-36 155.6 147 57.8
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 5.1e-36 154.5 146 58.2
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 5.1e-36 154.5 96 74.0
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 5.1e-36 154.5 147 58.5
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.6e-36 153.7 146 55.5
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.6e-36 153.7 146 55.5
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 8.6e-36 153.7 148 59.5
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 1.5e-35 152.9 146 58.9
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.9e-35 152.5 149 56.4
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 2.5e-35 152.1 146 56.2
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.3e-35 151.8 146 56.8
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 3.3e-35 151.8 147 56.5
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 3.3e-35 151.8 146 55.5
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 3.3e-35 151.8 147 55.8
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 4.3e-35 151.4 96 75.0
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 4.3e-35 151.4 149 56.4
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 5.6e-35 151.0 146 54.8
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 7.3e-35 150.6 146 54.8
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 9.5e-35 150.2 96 75.0
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.2e-34 149.8 96 75.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.6e-34 149.4 147 56.5
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.6e-34 149.4 96 72.9
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.1e-34 149.1 147 53.7
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.1e-34 149.1 132 62.1
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.8e-34 148.7 132 62.1
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.8e-34 148.7 132 62.1
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 4.7e-34 147.9 96 72.9
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 4.7e-34 147.9 96 72.9
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 6.2e-34 147.5 96 72.9
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-33 146.7 96 71.9
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-33 146.7 146 54.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.1e-33 146.7 96 71.9
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.4e-33 146.4 96 70.8
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.8e-33 146.0 97 74.2
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.0e-33 144.8 96 70.8
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 5.2e-33 144.4 144 57.6
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 8.9e-33 143.7 96 70.8
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 8.9e-33 143.7 147 55.1
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 8.9e-33 143.7 130 59.2
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 2.0e-32 142.5 146 54.1
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 2.6e-32 142.1 146 50.0
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 3.4e-32 141.7 97 70.1
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.4e-32 141.4 96 68.8
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 5.8e-32 141.0 137 59.1
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 7.6e-32 140.6 148 55.4
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 9.9e-32 140.2 140 53.6
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.8e-31 138.3 149 53.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.8e-31 138.3 149 53.0
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 3.8e-31 138.3 121 62.8
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 8.4e-31 137.1 146 50.0
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.1e-30 136.7 150 53.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.9e-30 136.0 150 53.3
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 3.2e-30 135.2 149 53.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 3.2e-30 135.2 149 53.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 3.2e-30 135.2 149 53.0
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 7.1e-30 134.0 125 57.6
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.2e-29 133.3 100 72.0
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.6e-29 132.9 149 53.0
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.6e-29 132.9 134 55.2
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 2.1e-29 132.5 149 52.3
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 2.1e-29 132.5 146 52.1
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 4.6e-29 131.3 147 52.4
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 4.6e-29 131.3 147 52.4
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 4.6e-29 131.3 147 52.4
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 7.8e-29 130.6 144 50.7
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.3e-28 129.8 146 50.7
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 3.9e-28 128.3 132 55.3
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.1e-25 120.2 151 47.0
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.5e-24 116.3 123 52.8
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.0e-24 115.9 134 52.2
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 2.6e-24 115.5 67 82.1
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.1e-21 105.9 75 70.7
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 4.6e-21 104.8 100 57.0
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 2.5e-19 99.0 97 58.8
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 2.1e-13 79.3 86 51.2
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.8e-10 68.9 98 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 6.9e-09 64.3 41 70.7


User provided reference genes

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