Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032645 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 7.1e-65 250.4 119 100.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.5e-11 71.6 39 87.2
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 5.9e-11 71.2 53 67.9
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.3e-10 70.1 39 84.6
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 1.3e-10 70.1 39 84.6
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.7e-10 69.7 39 82.1
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 1.7e-10 69.7 53 66.0
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 2.2e-10 69.3 39 84.6
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 2.9e-10 68.9 39 84.6
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 2.9e-10 68.9 39 84.6
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 2.9e-10 68.9 39 84.6
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 5.0e-10 68.2 53 64.2
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 6.5e-10 67.8 40 80.0
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 6.5e-10 67.8 53 64.2
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 8.5e-10 67.4 39 79.5
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 8.5e-10 67.4 39 82.1
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 1.1e-09 67.0 39 79.5
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.1e-09 67.0 39 79.5
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 1.4e-09 66.6 39 82.1
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 1.4e-09 66.6 55 63.6
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 2.5e-09 65.9 39 79.5
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 2.5e-09 65.9 39 82.1
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 3.2e-09 65.5 39 79.5
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 3.2e-09 65.5 39 79.5
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 3.2e-09 65.5 39 76.9
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 4.2e-09 65.1 39 76.9
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 4.2e-09 65.1 48 68.8
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 4.2e-09 65.1 55 61.8
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 5.5e-09 64.7 36 86.1
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 7.2e-09 64.3 39 76.9
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 9.4e-09 63.9 39 76.9
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 9.4e-09 63.9 39 76.9
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 9.4e-09 63.9 39 74.4
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 9.4e-09 63.9 39 74.4
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 9.4e-09 63.9 39 76.9
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 1.2e-08 63.5 48 64.6
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 1.2e-08 63.5 39 76.9
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 1.6e-08 63.2 39 74.4
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 2.7e-08 62.4 35 85.7
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 3.6e-08 62.0 39 71.8
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.7e-08 61.6 38 78.9
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 4.7e-08 61.6 39 71.8
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 4.7e-08 61.6 39 76.9
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 4.7e-08 61.6 39 74.4
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 7.9e-08 60.8 39 74.4
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 7.9e-08 60.8 39 74.4
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 7.9e-08 60.8 39 74.4
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 7.9e-08 60.8 46 67.4
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 1.0e-07 60.5 39 71.8
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 1.0e-07 60.5 35 82.9
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.0e-07 60.5 39 71.8
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 1.0e-07 60.5 80 46.2
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 1.4e-07 60.1 32 90.6
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 1.8e-07 59.7 39 69.2
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 2.3e-07 59.3 38 73.7
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 2.3e-07 59.3 34 85.3
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.0e-07 58.9 39 71.8
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.0e-07 58.9 39 71.8
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 3.9e-07 58.5 32 84.4
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 3.9e-07 58.5 39 71.8
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 5.1e-07 58.2 39 66.7
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 5.1e-07 58.2 39 66.7
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 5.1e-07 58.2 36 75.0
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 5.1e-07 58.2 38 73.7
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 8.8e-07 57.4 39 66.7
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 8.8e-07 57.4 39 66.7
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 8.8e-07 57.4 38 71.1
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 8.8e-07 57.4 39 66.7
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 8.8e-07 57.4 39 66.7
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 1.1e-06 57.0 38 71.1
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 4.4e-06 55.1 39 66.7
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 7.4e-06 54.3 64 48.4


User provided reference genes

Program Settings