Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.1e-216 755.4 377 100.0
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 9.0e-215 750.0 377 98.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 1.8e-154 549.7 328 82.9
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 2.0e-145 519.6 382 71.5
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 3.7e-144 515.4 382 71.5
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 7.6e-129 464.5 381 65.4
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 7.1e-127 458.0 383 64.8
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 2.1e-126 456.4 384 64.1
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.1e-124 450.7 378 61.9
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.5e-124 449.5 335 67.5
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 3.3e-124 449.1 359 67.4
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.2e-123 447.2 377 63.9
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 4.7e-123 445.3 291 75.6
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 6.2e-123 444.9 373 63.3
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.5e-121 440.3 273 78.8
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 7.6e-121 438.0 377 61.8
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 9.9e-121 437.6 365 64.1
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 9.9e-121 437.6 367 64.0
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.4e-120 434.9 382 61.5
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 2.4e-119 433.0 377 61.3
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 2.4e-119 433.0 381 61.7
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.2e-118 430.6 365 62.5
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 7.8e-118 427.9 365 61.6
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.0e-117 427.6 330 66.1
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.3e-117 427.2 365 61.6
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 2.3e-117 426.4 330 66.4
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 5.1e-117 425.2 330 65.8
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 7.3e-116 421.4 356 62.4
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 4.8e-115 418.7 290 71.4
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.4e-114 417.2 386 59.1
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.8e-114 416.8 381 59.3
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 2.4e-114 416.4 379 59.9
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 2.4e-114 416.4 376 61.4
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 3.1e-114 416.0 376 59.3
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 4.0e-114 415.6 375 60.0
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 5.3e-114 415.2 374 58.6
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 5.3e-114 415.2 272 74.3
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 5.3e-114 415.2 376 59.6
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 5.3e-114 415.2 375 59.2
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 6.9e-114 414.8 360 62.5
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 6.9e-114 414.8 344 64.0
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.5e-113 413.7 386 56.5
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.6e-113 412.9 331 65.0
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.6e-113 412.9 378 60.1
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.4e-113 412.5 376 58.5
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 5.8e-113 411.8 379 59.6
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 7.6e-113 411.4 352 61.4
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 7.6e-113 411.4 377 59.9
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.3e-112 410.6 348 63.2
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.3e-112 410.6 348 63.8
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.2e-112 409.8 374 58.3
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 3.8e-112 409.1 373 58.2
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.9e-111 406.8 382 58.9
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 3.2e-111 406.0 365 60.8
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 3.2e-111 406.0 373 58.2
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 4.2e-111 405.6 294 71.1
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 4.2e-111 405.6 327 65.4
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 5.4e-111 405.2 276 72.5
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 9.3e-111 404.4 321 65.1
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.2e-110 404.1 373 57.9
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 6.0e-110 401.7 290 67.9
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.7e-109 400.2 357 58.3
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 2.3e-109 399.8 374 58.0
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.5e-108 397.1 290 69.0
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 7.4e-108 394.8 301 67.4
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 2.1e-107 393.3 288 68.1
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.1e-107 393.3 306 64.1
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.8e-107 392.9 296 65.5
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 4.8e-107 392.1 390 55.1
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.8e-106 390.2 378 55.6
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.8e-106 390.2 379 55.4
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.8e-106 390.2 272 70.2
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.4e-106 389.8 354 60.2
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.4e-106 389.8 308 64.3
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 3.1e-106 389.4 379 55.7
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 9.0e-106 387.9 379 55.7
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 9.0e-106 387.9 379 55.7
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.2e-105 387.5 309 65.4
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.0e-105 386.7 377 55.7
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 4.5e-105 385.6 388 54.6
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 5.8e-105 385.2 376 57.2
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.3e-104 384.0 411 50.6
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.4e-103 380.6 295 63.4
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 3.2e-103 379.4 396 55.1
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 4.2e-103 379.0 292 66.1
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 7.1e-103 378.3 379 55.1
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.1e-102 376.7 358 56.4
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 4.6e-102 375.6 293 63.8
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.0e-101 374.4 297 64.6
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.0e-101 372.9 344 58.7
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 6.7e-101 371.7 293 63.5
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 8.7e-101 371.3 386 55.2
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 3.3e-100 369.4 293 63.1
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.1e-98 364.4 341 59.2
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 9.0e-98 361.3 346 57.5
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 3.4e-97 359.4 395 51.6
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 4.9e-96 355.5 291 62.5
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 1.9e-95 353.6 469 45.2
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.6e-91 340.5 291 60.5
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.1e-91 340.1 246 66.7
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.1e-91 340.1 258 66.7
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 6.3e-91 338.6 408 49.8
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.1e-90 337.8 275 64.0
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 1.5e-89 334.0 257 65.8
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.6e-89 333.2 244 68.4
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 1.3e-88 330.9 344 54.7
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 5.0e-88 328.9 227 69.6
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 7.2e-87 325.1 273 60.1
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 2.1e-86 323.6 274 61.7
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 3.6e-86 322.8 238 66.4
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 1.4e-79 300.8 277 56.0
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 9.1e-74 281.6 287 53.7
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 2.6e-73 280.0 241 61.8
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 5.2e-69 265.8 230 60.0
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.6e-68 263.5 228 57.9
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.5e-63 246.9 274 47.8
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 4.2e-63 246.1 232 53.9
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 5.2e-61 239.2 306 47.7
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 1.3e-59 234.6 190 57.9
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 4.5e-41 172.9 140 58.6
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 5.9e-41 172.6 138 64.5
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 2.3e-40 170.6 203 45.3
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 6.4e-35 152.5 146 58.9
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.3e-23 113.6 68 79.4
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 8.1e-22 109.0 122 55.7
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 4.0e-21 106.7 296 30.1
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 3.8e-11 73.6 47 72.3
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 1.4e-10 71.6 83 44.6
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.1e-06 57.8 33 87.9


User provided reference genes

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