Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 2.0e-78 295.8 166 100.0
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 2.8e-67 258.8 166 81.3
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 2.2e-64 249.2 166 82.5
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.1e-63 246.9 166 77.7
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 4.1e-63 245.0 166 77.7
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 5.4e-63 244.6 164 78.7
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 3.9e-61 238.4 166 74.7
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 3.9e-61 238.4 163 76.7
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 5.1e-61 238.0 166 74.7
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 6.6e-61 237.7 166 74.7
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 1.5e-60 236.5 166 71.7
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 3.3e-60 235.3 166 74.1
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 4.3e-60 235.0 166 72.9
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 9.6e-60 233.8 166 72.9
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 1.2e-59 233.4 166 71.7
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 1.2e-59 233.4 166 74.7
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 1.6e-59 233.0 165 73.9
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 1.6e-59 233.0 166 74.7
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.1e-59 232.6 166 72.3
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 8.1e-59 230.7 166 72.3
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.8e-58 229.6 166 71.7
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.8e-58 229.6 166 71.7
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 2.4e-58 229.2 166 74.1
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 3.1e-58 228.8 167 77.2
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 5.2e-58 228.0 165 72.7
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 6.8e-58 227.6 167 71.9
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 6.8e-58 227.6 166 71.7
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 6.8e-58 227.6 168 73.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.2e-57 226.9 168 73.8
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.6e-57 225.7 166 70.5
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.6e-57 225.7 166 70.5
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 3.4e-57 225.3 163 69.9
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 4.4e-57 224.9 166 69.9
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 5.8e-57 224.6 166 72.3
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 9.9e-57 223.8 166 68.7
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 1.3e-56 223.4 166 69.9
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.3e-56 223.4 166 69.3
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 1.7e-56 223.0 164 79.3
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.7e-56 223.0 166 69.9
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 2.2e-56 222.6 166 70.5
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.2e-56 222.6 166 69.9
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 2.9e-56 222.2 168 72.6
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 2.9e-56 222.2 166 71.1
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 4.9e-56 221.5 166 69.3
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 6.4e-56 221.1 166 66.9
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 1.1e-55 220.3 164 78.7
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 1.1e-55 220.3 166 68.7
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 1.4e-55 219.9 170 67.6
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 2.4e-55 219.2 166 69.3
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 4.2e-55 218.4 167 68.9
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 4.2e-55 218.4 166 68.7
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 4.2e-55 218.4 163 68.7
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 5.4e-55 218.0 166 68.1
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 7.1e-55 217.6 166 68.7
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 9.3e-55 217.2 164 77.4
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 9.3e-55 217.2 166 66.3
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.2e-54 216.9 166 68.7
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 1.2e-54 216.9 166 68.7
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 1.6e-54 216.5 163 69.3
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 4.6e-54 214.9 166 68.7
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 4.6e-54 214.9 166 67.5
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 4.6e-54 214.9 166 67.5
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 1.3e-53 213.4 166 66.9
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.3e-53 213.4 166 66.9
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 1.7e-53 213.0 164 76.2
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 1.7e-53 213.0 166 66.9
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 3.0e-53 212.2 163 65.6
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 3.9e-53 211.8 166 66.3
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 5.1e-53 211.5 166 66.3
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 8.7e-53 210.7 163 71.2
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 1.9e-52 209.5 122 79.5
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 9.6e-52 207.2 163 65.0
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 1.3e-51 206.8 163 69.9
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 1.6e-51 206.5 121 81.8
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 2.8e-51 205.7 164 65.9
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 3.6e-51 205.3 166 72.9
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 6.2e-51 204.5 166 72.9
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 6.2e-51 204.5 166 72.9
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 1.8e-50 203.0 166 62.7
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 1.8e-50 203.0 166 63.3
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 1.8e-50 203.0 168 70.8
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 2.4e-50 202.6 163 63.8
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 3.1e-50 202.2 161 64.6
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 3.1e-50 202.2 168 65.5
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 5.3e-50 201.4 120 79.2
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 6.9e-50 201.1 161 64.6
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 6.9e-50 201.1 161 64.6
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 6.9e-50 201.1 122 79.5
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 6.9e-50 201.1 122 79.5
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 6.9e-50 201.1 161 65.2
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 9.0e-50 200.7 164 64.6
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.2e-49 200.3 164 64.6
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 1.5e-49 199.9 164 64.6
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 2.0e-49 199.5 161 65.2
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 3.4e-49 198.7 165 64.2
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 3.4e-49 198.7 165 64.2
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 3.4e-49 198.7 163 63.2
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 5.8e-49 198.0 160 63.8
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 5.8e-49 198.0 163 62.6
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 7.6e-49 197.6 163 62.6
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 7.6e-49 197.6 163 66.3
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 4.9e-48 194.9 161 62.7
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 6.4e-48 194.5 150 68.7
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 8.4e-48 194.1 164 62.8
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 1.4e-47 193.4 166 58.4
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 2.7e-46 189.1 118 72.9
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 8.1e-43 177.6 105 81.0
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 1.1e-42 177.2 150 61.3
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 3.1e-42 175.6 152 68.4
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 3.0e-37 159.1 91 82.4
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 1.1e-31 140.6 117 54.7
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 1.8e-29 133.3 77 75.3
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 8.7e-29 131.0 165 43.0
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 3.3e-28 129.0 82 79.3
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 1.4e-23 113.6 113 57.5
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 7.1e-23 111.3 90 63.3
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 3.5e-22 109.0 90 62.2
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 4.6e-22 108.6 119 46.2
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 6.1e-22 108.2 167 49.7
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 4.5e-17 92.0 58 75.9
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 3.0e-13 79.3 118 35.6
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 2.0e-12 76.6 48 70.8
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 3.3e-12 75.9 125 34.4
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 4.3e-12 75.5 48 72.9
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.4e-07 60.5 131 32.1


User provided reference genes

Program Settings