Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032591 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D023833 3.0e-78 295.0 144 100.0
Actinidia37861 Actinidia chinensis HOM05D000050 ORTHO05D006094 6.0e-42 174.5 150 63.3
CSS0002447 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006094 6.0e-42 174.5 150 63.3
Dinv02783 Davidia involucrata HOM05D000050 ORTHO05D006094 2.3e-41 172.6 150 62.7
Nitab4.5_0000062g0370 Nicotiana tabacum HOM05D000050 ORTHO05D006094 2.3e-41 172.6 155 58.7
Nitab4.5_0005702g0010 Nicotiana tabacum HOM05D000050 ORTHO05D006094 2.3e-41 172.6 155 58.7
HanXRQChr07g0200131 Helianthus annuus HOM05D000050 ORTHO05D006094 5.0e-41 171.4 150 62.0
Prupe.7G024400 Prunus persica HOM05D000050 ORTHO05D006094 5.0e-41 171.4 150 61.3
MD14G1093100 Malus domestica HOM05D000050 ORTHO05D006094 6.6e-41 171.0 150 62.0
Manes.02G219500 Manihot esculenta HOM05D000050 ORTHO05D006094 6.6e-41 171.0 150 62.0
QL07p015372 Quercus lobata HOM05D000050 ORTHO05D006094 6.6e-41 171.0 150 62.0
Sc13g0000750 Simmondsia chinensis HOM05D000050 ORTHO05D006094 8.6e-41 170.6 150 60.7
Migut.K00181 Erythranthe guttata HOM05D000050 ORTHO05D006094 1.1e-40 170.2 150 60.0
Nn7g37175 Nelumbo nucifera HOM05D000050 ORTHO05D006094 1.1e-40 170.2 150 61.3
Potri.006G026900 Populus trichocarpa HOM05D000050 ORTHO05D006094 1.1e-40 170.2 150 61.3
vmacro07592 Vaccinium macrocarpon HOM05D000050 ORTHO05D006094 1.1e-40 170.2 149 61.7
COL.COLO4_22768 Corchorus olitorius HOM05D000050 ORTHO05D006094 1.5e-40 169.9 152 61.2
Duzib128G0594 Durio zibethinus HOM05D000050 ORTHO05D006094 1.5e-40 169.9 150 61.3
Thecc.05G130500 Theobroma cacao HOM05D000050 ORTHO05D006094 1.5e-40 169.9 150 61.3
FAN23G0798 Fragaria x ananassa HOM05D000050 ORTHO05D006094 1.9e-40 169.5 136 66.2
Potri.016G024800 Populus trichocarpa HOM05D000050 ORTHO05D006094 1.9e-40 169.5 152 59.9
TWI53G0709 Tripterygium wilfordii HOM05D000050 ORTHO05D006094 1.9e-40 169.5 150 61.3
TWI74G0450 Tripterygium wilfordii HOM05D000050 ORTHO05D006094 2.5e-40 169.1 150 60.7
Duzib093G1108 Durio zibethinus HOM05D000050 ORTHO05D006094 3.3e-40 168.7 152 59.9
Cpa.g.sc92.55 Carica papaya HOM05D000050 ORTHO05D006094 4.3e-40 168.3 150 61.3
CiPaw.09G161800 Carya illinoinensis HOM05D000050 ORTHO05D006094 4.3e-40 168.3 150 60.7
Eucgr.K01701 Eucalyptus grandis HOM05D000050 ORTHO05D006094 4.3e-40 168.3 152 59.9
Lsat_1_v5_gn_2_86281 Lactuca sativa HOM05D000050 ORTHO05D006094 4.3e-40 168.3 149 61.7
Lj2A416G30 Lonicera japonica HOM05D000050 ORTHO05D006094 4.3e-40 168.3 150 60.7
MD12G1099900 Malus domestica HOM05D000050 ORTHO05D006094 4.3e-40 168.3 150 60.7
Oeu044221.1 Olea europaea HOM05D000050 ORTHO05D006094 4.3e-40 168.3 149 61.1
Peaxi162Scf00153g01027 Petunia axillaris HOM05D000050 ORTHO05D006094 4.3e-40 168.3 150 60.7
Gohir.A11G305200 Gossypium hirsutum HOM05D000050 ORTHO05D006094 5.6e-40 167.9 150 60.0
Gohir.D11G320600 Gossypium hirsutum HOM05D000050 ORTHO05D006094 5.6e-40 167.9 150 60.0
PGR142G1375 Punica granatum HOM05D000050 ORTHO05D006094 5.6e-40 167.9 150 60.0
RhsimUnG0021100 Rhododendron simsii HOM05D000050 ORTHO05D006094 5.6e-40 167.9 147 61.9
GSVIVG01025833001 Vitis vinifera HOM05D000050 ORTHO05D006094 5.6e-40 167.9 153 59.5
Migut.J01570 Erythranthe guttata HOM05D000050 ORTHO05D006094 7.3e-40 167.5 150 60.0
TAR633G2380 Trochodendron aralioides HOM05D000050 ORTHO05D006094 7.3e-40 167.5 150 59.3
Atru.chr8.916 Acer truncatum HOM05D000050 ORTHO05D006094 9.5e-40 167.2 150 60.0
ECA246G3238 Erigeron canadensis HOM05D000050 ORTHO05D006094 9.5e-40 167.2 150 60.0
Manes.09G074400 Manihot esculenta HOM05D000050 ORTHO05D006094 9.5e-40 167.2 150 60.0
Ciclev10012469m.g Citrus clementina HOM05D000050 ORTHO05D006094 1.2e-39 166.8 150 60.0
Gorai.007G350800 Gossypium raimondii HOM05D000050 ORTHO05D006094 1.2e-39 166.8 153 58.8
Sed0004724 Sechium edule HOM05D000050 ORTHO05D006094 1.2e-39 166.8 150 60.0
SGA_v2.0_scaffold66G22321 Striga asiatica HOM05D000050 ORTHO05D006094 1.2e-39 166.8 149 59.7
MSTRG.19762 Avicennia marina HOM05D000050 ORTHO05D006094 1.6e-39 166.4 150 58.7
CSS0029587 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D006094 1.6e-39 166.4 146 62.3
CiPaw.10G122100 Carya illinoinensis HOM05D000050 ORTHO05D006094 1.6e-39 166.4 150 60.0
Glyma.19G072800 Glycine max HOM05D000050 ORTHO05D006094 1.6e-39 166.4 150 60.0
Hma1.2p1_0153F.1_g067960 Hydrangea macrophylla HOM05D000050 ORTHO05D006094 1.6e-39 166.4 162 57.4
Glyma.19G121700 Glycine max HOM05D000050 ORTHO05D006094 2.1e-39 166.0 150 60.7
Lsat_1_v5_gn_4_175421 Lactuca sativa HOM05D000050 ORTHO05D006094 2.1e-39 166.0 149 59.7
RcHm_v2.0_Chr3g0495201 Rosa chinensis HOM05D000050 ORTHO05D006094 2.1e-39 166.0 150 60.7
FvH4_1g29560 Fragaria vesca HOM05D000050 ORTHO05D006094 3.6e-39 165.2 150 60.0
CAN.G128.107 Capsicum annuum HOM05D000050 ORTHO05D006094 4.7e-39 164.9 149 59.7
HanXRQChr14g0448081 Helianthus annuus HOM05D000050 ORTHO05D006094 4.7e-39 164.9 150 58.7
MBI19_g10815_MAGBIO Magnolia biondii HOM05D000050 ORTHO05D006094 4.7e-39 164.9 150 58.7
Phvul.001G102600 Phaseolus vulgaris HOM05D000050 ORTHO05D006094 4.7e-39 164.9 150 60.0
ATR1096G087 Amborella trichopoda HOM05D000050 ORTHO05D006094 8.1e-39 164.1 150 58.7
Cc06_g22700 Coffea canephora HOM05D000050 ORTHO05D006094 8.1e-39 164.1 150 58.7
ECA238G2534 Erigeron canadensis HOM05D000050 ORTHO05D006094 8.1e-39 164.1 150 58.7
MBI13_g32884_MAGBIO Magnolia biondii HOM05D000050 ORTHO05D006094 8.1e-39 164.1 175 53.7
Oeu009509.1 Olea europaea HOM05D000050 ORTHO05D006094 8.1e-39 164.1 150 59.3
SalBow6G5391 Salvia bowleyana HOM05D000050 ORTHO05D006094 1.1e-38 163.7 150 57.3
Lj1g0018365 Lotus japonicus HOM05D000050 ORTHO05D006094 1.4e-38 163.3 150 59.3
Aqoxy1G00103 Aquilegia oxysepala HOM05D000050 ORTHO05D006094 1.8e-38 162.9 150 58.7
CANSAT21G2133 Cannabis sativa HOM05D000050 ORTHO05D006094 1.8e-38 162.9 150 59.3
ClCG04G004980 Citrullus lanatus HOM05D000050 ORTHO05D006094 1.8e-38 162.9 159 56.6
Glyma.03G004200 Glycine max HOM05D000050 ORTHO05D006094 1.8e-38 162.9 150 59.3
Solyc10g081160.2 Solanum lycopersicum HOM05D000050 ORTHO05D006094 1.8e-38 162.9 150 58.0
Sopen10g031660 Solanum pennellii HOM05D000050 ORTHO05D006094 1.8e-38 162.9 150 58.0
PGSC0003DMG400028110 Solanum tuberosum HOM05D000050 ORTHO05D006094 1.8e-38 162.9 150 58.0
FAN26G1674 Fragaria x ananassa HOM05D000050 ORTHO05D006094 2.3e-38 162.5 153 58.2
AUR62018450 Chenopodium quinoa HOM05D000050 ORTHO05D006094 3.1e-38 162.2 150 58.0
AUR62020984 Chenopodium quinoa HOM05D000050 ORTHO05D006094 3.1e-38 162.2 150 58.0
Psat0s3111g0040 Pisum sativum HOM05D000050 ORTHO05D006094 5.2e-38 161.4 150 58.7
Ah.04g150110 Amaranthus hybridus HOM05D000050 ORTHO05D006094 6.8e-38 161.0 150 57.3
EL10Ac3g07360 Beta vulgaris HOM05D000050 ORTHO05D006094 6.8e-38 161.0 151 57.6
CsaV3_4G027690 Cucumis sativus L. HOM05D000050 ORTHO05D006094 6.8e-38 161.0 150 58.7
HPP92_010290 Vanilla planifolia HOM05D000050 ORTHO05D006094 6.8e-38 161.0 150 58.7
Os06g0660700 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D006094 8.9e-38 160.6 151 57.0
Sed0007736 Sechium edule HOM05D000050 ORTHO05D006094 8.9e-38 160.6 150 58.7
MSTRG.6282 Avicennia marina HOM05D000050 ORTHO05D006094 1.5e-37 159.8 150 56.7
VMungo1383G0912 Vigna mungo HOM05D000050 ORTHO05D006094 1.5e-37 159.8 150 58.0
CDE08G1544 Ceratophyllum demersum HOM05D000050 ORTHO05D006094 2.0e-37 159.5 150 58.0
DCAR_020624 Daucus carota HOM05D000050 ORTHO05D006094 2.0e-37 159.5 150 58.0
FAN19G1441 Fragaria x ananassa HOM05D000050 ORTHO05D006094 2.0e-37 159.5 162 55.6
Lalb_Chr14g0365241 Lupinus albus HOM05D000050 ORTHO05D006094 2.0e-37 159.5 150 57.3
Lalb_Chr22g0358131 Lupinus albus HOM05D000050 ORTHO05D006094 2.0e-37 159.5 150 57.3
Medtr7g087590 Medicago truncatula HOM05D000050 ORTHO05D006094 2.0e-37 159.5 149 58.4
THA.LOC104816492 Tarenaya hassleriana HOM05D000050 ORTHO05D006094 2.6e-37 159.1 150 57.3
DCAR_013516 Daucus carota HOM05D000050 ORTHO05D006094 3.4e-37 158.7 151 56.3
arahy.Tifrunner.gnm1.ann1.Z0C2B4 Arachis hypogaea HOM05D000050 ORTHO05D006094 5.8e-37 157.9 163 55.2
arahy.Tifrunner.gnm1.ann1.Z6KCP2 Arachis hypogaea HOM05D000050 ORTHO05D006094 5.8e-37 157.9 163 55.2
TPR.G23680 Trifolium pratense HOM05D000050 ORTHO05D006094 5.8e-37 157.9 150 57.3
THA.LOC104823160 Tarenaya hassleriana HOM05D000050 ORTHO05D006094 7.5e-37 157.5 150 56.0
Lalb_Chr24g0400711 Lupinus albus HOM05D000050 ORTHO05D006094 1.3e-36 156.8 150 56.7
Zm00001eb389230 Zea mays HOM05D000050 ORTHO05D006094 1.3e-36 156.8 147 57.8
THA.LOC104826883 Tarenaya hassleriana HOM05D000050 ORTHO05D006094 1.7e-36 156.4 150 56.0
Zm00001eb274710 Zea mays HOM05D000050 ORTHO05D006094 2.2e-36 156.0 150 56.0
BcaC06g32219 Brassica carinata HOM05D000050 ORTHO05D006094 4.9e-36 154.8 150 57.3
A10p31070 Brassica napus HOM05D000050 ORTHO05D006094 4.9e-36 154.8 151 57.6
C09p71600 Brassica napus HOM05D000050 ORTHO05D006094 4.9e-36 154.8 150 57.3
Thhalv10014464m.g Eutrema salsugineum HOM05D000050 ORTHO05D006094 4.9e-36 154.8 150 57.3
Sp6g37750 Schrenkiella parvula HOM05D000050 ORTHO05D006094 4.9e-36 154.8 150 57.3
unitig_46.g18483 Utricularia gibba HOM05D000050 ORTHO05D006094 6.4e-36 154.5 150 54.0
AL6G14860 Arabidopsis lyrata HOM05D000050 ORTHO05D006094 1.1e-35 153.7 150 56.7
AT5G05080 Arabidopsis thaliana HOM05D000050 ORTHO05D006094 1.1e-35 153.7 150 56.7
Carub.0006s0401 Capsella rubella HOM05D000050 ORTHO05D006094 1.1e-35 153.7 150 56.7
A03p02080 Brassica napus HOM05D000050 ORTHO05D006094 1.4e-35 153.3 150 56.7
BraA03t09576Z Brassica rapa HOM05D000050 ORTHO05D006094 1.4e-35 153.3 150 56.7
Aa31LG11G5900 Aethionema arabicum HOM05D000050 ORTHO05D006094 2.4e-35 152.5 151 57.0
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.4e-35 152.5 147 57.1
C03p02430 Brassica napus HOM05D000050 ORTHO05D006094 2.4e-35 152.5 148 57.4
BolC3t12794H Brassica oleracea HOM05D000050 ORTHO05D006094 2.4e-35 152.5 148 57.4
HPP92_015381 Vanilla planifolia HOM05D000050 ORTHO05D006094 3.2e-35 152.1 171 50.3
PSO339G5524 Papaver somniferum HOM05D000050 ORTHO05D006094 4.1e-35 151.8 147 57.1
PSO384G4718 Papaver somniferum HOM05D000050 ORTHO05D006094 4.1e-35 151.8 147 57.1
BraA10t45151Z Brassica rapa HOM05D000050 ORTHO05D006094 5.4e-35 151.4 148 57.4
CARHR208190 Cardamine hirsuta HOM05D000050 ORTHO05D006094 9.2e-35 150.6 146 57.5
unitig_37.g12771 Utricularia gibba HOM05D000050 ORTHO05D006094 6.0e-34 147.9 164 48.8
Haze_20344 Corylus avellana HOM05D000050 ORTHO05D006094 3.6e-31 138.7 133 59.4
Mapoly0041s0074 Marchantia polymorpha HOM05D000050 ORTHO05D006094 6.2e-31 137.9 149 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1453 Anthoceros agrestis HOM05D000050 ORTHO05D006094 5.2e-30 134.8 149 49.0
SMO118G0233 Selaginella moellendorffii HOM05D000050 ORTHO05D006094 3.4e-29 132.1 159 47.8
HPP92_015180 Vanilla planifolia HOM05D000050 ORTHO05D006094 4.4e-29 131.7 150 51.3
C09p71670 Brassica napus HOM05D000050 ORTHO05D006094 9.2e-27 124.0 131 53.4
Pp3c2_13870 Physcomitrium patens HOM05D000050 ORTHO05D006094 2.1e-26 122.9 151 47.0
CBR_g12172 Chara braunii HOM05D000050 ORTHO05D006094 6.0e-26 121.3 148 45.3
HanXRQChr12g0380851 Helianthus annuus HOM05D000050 ORTHO05D006094 1.0e-25 120.6 96 68.8
CSS0021227 Camellia sinensis var. sinensis HOM05D000050 ORTHO05D023833 3.4e-21 105.5 101 58.4
Lj2A416T35 Lonicera japonica HOM05D000050 ORTHO05D006094 5.8e-21 104.8 50 98.0
Ca_03424_v3 Cicer arietinum L. HOM05D000050 ORTHO05D006094 1.3e-20 103.6 50 96.0
MELO3C026341.2 Cucumis melo HOM05D000050 ORTHO05D006094 1.3e-20 103.6 50 96.0
C09p71640 Brassica napus HOM05D000050 ORTHO05D006094 2.9e-20 102.4 50 96.0
BolC9t59922H Brassica oleracea HOM05D000050 ORTHO05D006094 2.9e-20 102.4 50 96.0
Sabra06G0019800 Salix brachista HOM05D000050 ORTHO05D006094 3.8e-20 102.1 50 94.0
Sabra16G0030700 Salix brachista HOM05D000050 ORTHO05D006094 3.8e-20 102.1 50 94.0
SGA_v2.0_scaffold69G23199 Striga asiatica HOM05D000050 ORTHO05D006094 5.4e-19 98.2 74 66.2
SalBow6G5819 Salvia bowleyana HOM05D000050 ORTHO05D006094 7.1e-19 97.8 50 86.0
SEGI_27764 Sequoiadendron giganteum HOM05D000050 ORTHO05D006094 1.2e-18 97.1 50 88.0
PRCOL_00002445 Prasinoderma coloniale HOM05D000050 ORTHO05D006094 2.1e-18 96.3 145 37.2
EL10Ac2g03323 Beta vulgaris HOM05D000050 ORTHO05D006094 4.6e-18 95.1 75 62.7
HPP92_028310 Vanilla planifolia HOM05D000050 ORTHO05D006094 1.7e-17 93.2 50 86.0
MCO01G008 Micromonas commoda HOM05D000050 ORTHO05D006094 5.1e-17 91.7 143 37.1
Cre10.g430050 Chlamydomonas reinhardtii HOM05D000050 ORTHO05D006094 3.3e-16 89.0 160 34.4
EL10Ac5g10430 Beta vulgaris HOM05D000050 ORTHO05D023833 9.6e-16 87.4 48 83.3
HPP92_028547 Vanilla planifolia HOM05D000050 ORTHO05D006094 1.6e-15 86.7 75 57.3
MBI02_g35499_MAGBIO Magnolia biondii HOM05D000373 ORTHO05D011648 3.1e-14 82.4 49 77.6
Haze_26727 Corylus avellana HOM05D000050 ORTHO05D164918 3.4e-13 79.0 135 33.3
AUR62044412 Chenopodium quinoa HOM05D000050 ORTHO05D039035 7.1e-11 71.2 37 91.9
Sabra10G0132600 Salix brachista HOM05D000050 ORTHO05D023833 7.1e-11 71.2 48 70.8
EL10Ac4g08097 Beta vulgaris HOM05D000050 ORTHO05D023833 1.6e-10 70.1 41 75.6
Potri.010G173100 Populus trichocarpa HOM05D003183 ORTHO05D003697 1.6e-10 70.1 49 65.3
Sabra08G0061600 Salix brachista HOM05D003183 ORTHO05D003697 4.8e-07 58.5 66 53.0
Potri.008G083300 Populus trichocarpa HOM05D003183 ORTHO05D003697 8.1e-07 57.8 49 65.3
MBI02_g43086_MAGBIO Magnolia biondii HOM05D000050 ORTHO05D006094 6.9e-06 54.7 35 74.3


User provided reference genes

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