Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 9.5e-130 466.8 236 100.0
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 8.1e-121 437.2 238 92.4
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.7e-118 429.5 236 90.3
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 3.8e-118 428.3 232 92.7
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 6.4e-118 427.6 236 91.5
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 5.4e-117 424.5 238 89.9
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 5.4e-117 424.5 236 88.6
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 7.1e-117 424.1 236 89.8
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.1e-116 422.5 236 89.4
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 2.1e-116 422.5 235 89.8
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 7.8e-116 420.6 226 91.2
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 1.7e-115 419.5 236 88.1
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 2.3e-115 419.1 236 90.3
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.1e-115 417.9 236 89.0
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 5.1e-115 417.9 239 87.9
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.5e-114 415.6 236 88.1
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.6e-114 414.5 244 86.5
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 9.6e-114 413.7 236 87.3
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 1.3e-113 413.3 236 87.7
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.6e-113 412.9 236 86.4
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 3.6e-113 411.8 240 86.2
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 6.2e-113 411.0 236 86.4
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 8.1e-113 410.6 232 86.6
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 1.8e-112 409.5 236 86.0
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 2.4e-112 409.1 236 87.7
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.4e-112 409.1 236 86.0
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 5.3e-112 407.9 228 87.3
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 1.2e-111 406.8 225 87.6
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.0e-111 406.0 236 85.6
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 2.0e-111 406.0 236 86.0
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 5.8e-111 404.4 236 84.3
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 7.6e-111 404.1 236 85.6
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 9.9e-111 403.7 236 84.7
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 1.3e-110 403.3 236 84.3
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.7e-110 402.9 236 85.2
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 1.7e-110 402.9 236 84.7
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 2.9e-110 402.1 236 84.3
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.9e-110 402.1 236 84.3
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 2.9e-110 402.1 236 83.5
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 2.9e-110 402.1 236 83.9
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 3.8e-110 401.7 236 84.3
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 3.8e-110 401.7 232 83.6
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 4.9e-110 401.4 236 83.9
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 4.9e-110 401.4 236 83.9
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 6.4e-110 401.0 232 84.9
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.4e-110 400.6 236 83.9
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.4e-110 400.6 236 83.5
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 1.1e-109 400.2 236 86.0
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 1.4e-109 399.8 239 84.1
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 1.4e-109 399.8 251 82.5
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.4e-109 399.8 236 83.5
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.4e-109 399.8 236 83.5
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 1.9e-109 399.4 236 82.6
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 2.4e-109 399.1 236 81.8
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 3.2e-109 398.7 239 84.1
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 2.1e-108 396.0 232 84.5
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 2.7e-108 395.6 240 81.7
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 2.7e-108 395.6 240 83.3
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 4.6e-108 394.8 236 83.1
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 4.6e-108 394.8 236 82.6
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 6.0e-108 394.4 238 80.3
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 6.0e-108 394.4 237 83.5
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 6.0e-108 394.4 232 83.6
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 1.3e-107 393.3 225 84.9
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 3.0e-107 392.1 225 84.9
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 3.9e-107 391.7 239 81.2
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 5.1e-107 391.3 236 82.2
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.1e-107 391.3 240 81.7
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 5.1e-107 391.3 234 83.8
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.5e-106 389.8 225 84.0
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 9.6e-106 387.1 222 83.8
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 2.1e-105 386.0 236 83.5
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.1e-105 386.0 240 80.0
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 2.1e-105 386.0 232 81.9
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 4.8e-105 384.8 232 81.9
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 6.9e-104 380.9 237 81.9
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 6.9e-104 380.9 230 81.7
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.2e-103 380.2 237 79.3
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 2.0e-103 379.4 236 82.2
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 5.8e-103 377.9 236 78.0
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 1.3e-102 376.7 219 83.1
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 6.4e-102 374.4 236 78.0
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 1.1e-101 373.6 225 79.6
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.9e-101 372.9 234 78.6
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 2.4e-101 372.5 237 77.6
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 3.2e-101 372.1 236 76.3
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 3.2e-101 372.1 236 76.7
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 3.2e-101 372.1 236 76.7
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 3.2e-101 372.1 236 78.0
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 3.2e-101 372.1 238 79.0
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 3.2e-101 372.1 232 78.0
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 7.1e-101 370.9 237 77.6
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.6e-100 369.8 225 80.4
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 2.1e-100 369.4 234 78.2
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 2.7e-100 369.0 231 78.4
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 2.7e-100 369.0 236 77.5
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 3.5e-100 368.6 236 76.7
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 4.6e-100 368.2 222 80.2
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 4.6e-100 368.2 227 81.1
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 1.8e-99 366.3 236 76.7
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 2.3e-99 365.9 234 77.8
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 3.9e-99 365.2 330 62.1
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 6.7e-99 364.4 224 79.5
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 6.7e-99 364.4 240 80.0
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 8.7e-99 364.0 236 79.7
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.3e-98 362.1 236 80.1
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 7.4e-98 360.9 303 64.0
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 6.2e-97 357.8 231 77.1
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 9.0e-96 354.0 236 76.7
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.2e-95 353.6 260 69.2
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 7.6e-95 350.9 230 72.2
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 3.8e-94 348.6 187 91.4
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 1.8e-91 339.7 218 73.9
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 2.5e-90 335.9 225 72.9
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 8.2e-89 330.9 192 82.3
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 9.0e-88 327.4 236 70.3
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 5.8e-87 324.7 236 69.5
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 7.6e-87 324.3 235 71.9
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.3e-86 323.6 227 69.2
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.3e-86 323.6 227 69.6
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 4.2e-85 318.5 201 79.1
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 5.5e-85 318.2 198 78.8
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 1.0e-83 313.9 198 77.8
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 2.5e-82 309.3 227 62.6
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 8.2e-73 277.7 168 79.2
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.4e-72 276.9 197 70.1
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 5.5e-69 265.0 166 80.1
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.2e-68 263.8 228 62.7
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 7.5e-58 228.0 218 54.1
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.7e-57 226.9 150 70.7
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 4.7e-44 182.2 119 69.7
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 7.0e-40 168.3 105 82.9
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 1.8e-35 153.7 189 39.7
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 2.3e-30 136.7 97 75.3
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 1.0e-22 111.3 159 38.4
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.8e-11 73.9 74 48.6


User provided reference genes

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