Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032551 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 1.3e-60 236.1 116 100.0
CSS0011431 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 1.0e-52 209.9 108 93.5
CSS0043730 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 1.0e-52 209.9 108 93.5
CSS0043606 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 2.3e-52 208.8 107 94.4
CSS0033374 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 6.3e-50 200.7 108 89.8
CSS0046295 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 4.1e-49 198.0 102 95.1
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 1.8e-12 76.3 83 49.4
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 3.4e-11 72.0 63 61.9
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 4.8e-10 68.2 77 46.8
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.8e-09 66.2 68 51.5
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 1.2e-08 63.5 63 54.0
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 1.3e-07 60.1 71 47.9
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 2.3e-07 59.3 71 43.7
Gohir.A01G126300 Gossypium hirsutum HOM05D001049 ORTHO05D001986 2.5e-06 55.8 30 83.3
Gohir.D01G113900 Gossypium hirsutum HOM05D001049 ORTHO05D001986 2.5e-06 55.8 30 83.3
Gorai.002G138900 Gossypium raimondii HOM05D001049 ORTHO05D001986 2.5e-06 55.8 30 83.3
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 3.3e-06 55.5 64 42.2
BcaC09g50859 Brassica carinata HOM05D001049 ORTHO05D001986 4.2e-06 55.1 32 81.2
CSS0024879 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Dinv42608 Davidia involucrata HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Duzib041G0510 Durio zibethinus HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Duzib093G0120 Durio zibethinus HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Glyma.06G097200 Glycine max HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Gohir.A05G219300 Gossypium hirsutum HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Gohir.D05G221900 Gossypium hirsutum HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Gorai.009G229300 Gossypium raimondii HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Hma1.2p1_0125F.1_g058820 Hydrangea macrophylla HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
MD08G1199100 Malus domestica HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
MD15G1386100 Malus domestica HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
PGR042G3763 Punica granatum HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Thecc.08G071500 Theobroma cacao HOM05D001049 ORTHO05D001986 4.2e-06 55.1 25 92.0
Manes.18G058200 Manihot esculenta HOM05D001049 ORTHO05D001986 5.5e-06 54.7 25 92.0
Prupe.1G532800 Prunus persica HOM05D001049 ORTHO05D001986 5.5e-06 54.7 25 92.0
THA.LOC104806881 Tarenaya hassleriana HOM05D001049 ORTHO05D001986 5.5e-06 54.7 27 85.2
CANSAT25G1018 Cannabis sativa HOM05D001049 ORTHO05D001986 7.2e-06 54.3 27 81.5
Cc10_g15930 Coffea canephora HOM05D001049 ORTHO05D001986 9.5e-06 53.9 26 84.6
Glyma.04G095500 Glycine max HOM05D001049 ORTHO05D001986 9.5e-06 53.9 24 95.8
Lalb_Chr04g0252811 Lupinus albus HOM05D001049 ORTHO05D001986 9.5e-06 53.9 25 88.0
Lalb_Chr11g0064941 Lupinus albus HOM05D001049 ORTHO05D001986 9.5e-06 53.9 24 95.8
Phvul.008G182200 Phaseolus vulgaris HOM05D001049 ORTHO05D001986 9.5e-06 53.9 25 88.0
Phvul.009G036200 Phaseolus vulgaris HOM05D001049 ORTHO05D001986 9.5e-06 53.9 25 88.0
Sc15g0002720 Simmondsia chinensis HOM05D001049 ORTHO05D001986 9.5e-06 53.9 25 88.0
THA.LOC104799789 Tarenaya hassleriana HOM05D001049 ORTHO05D001986 9.5e-06 53.9 25 88.0


User provided reference genes

Program Settings