Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 1.2e-61 239.6 118 100.0
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 8.7e-15 84.0 116 44.0
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 1.1e-14 83.6 121 47.1
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 1.5e-14 83.2 48 77.1
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 6.2e-13 77.8 114 44.7
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 6.2e-13 77.8 119 42.0
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 8.1e-13 77.4 119 42.0
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 1.8e-12 76.3 112 42.0
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 3.1e-12 75.5 122 43.4
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 5.3e-12 74.7 112 46.4
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 9.0e-12 73.9 117 43.6
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 9.0e-12 73.9 118 44.1
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 1.5e-11 73.2 110 45.5
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 5.8e-11 71.2 113 40.7
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 2.2e-10 69.3 94 46.8
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.9e-10 68.9 119 42.9
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 2.9e-10 68.9 113 41.6
Oeu052012.1 Olea europaea HOM05D037150 ORTHO05D009506 4.9e-10 68.2 108 38.9
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 6.4e-10 67.8 73 54.8
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 8.4e-10 67.4 87 44.8
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 8.4e-10 67.4 58 56.9
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.1e-09 67.0 117 41.0
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 1.9e-09 66.2 69 52.2
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.4e-09 65.9 113 39.8
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 2.4e-09 65.9 113 39.8
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 2.4e-09 65.9 121 43.0
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 2.4e-09 65.9 121 43.0
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 3.2e-09 65.5 63 60.3
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 3.2e-09 65.5 119 40.3
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 5.5e-09 64.7 108 41.7
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.6e-08 63.2 108 40.7
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 2.1e-08 62.8 119 37.0
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.1e-08 62.8 119 36.1
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 2.7e-08 62.4 112 43.8
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 2.7e-08 62.4 79 50.6
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 2.7e-08 62.4 80 50.0
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 2.7e-08 62.4 80 45.0
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 3.5e-08 62.0 112 44.6
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.5e-08 62.0 112 44.6
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 3.5e-08 62.0 91 46.2
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 4.6e-08 61.6 87 42.5
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 4.6e-08 61.6 79 46.8
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 6.0e-08 61.2 111 44.1
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 6.0e-08 61.2 121 42.1
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 6.0e-08 61.2 73 50.7
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 1.0e-07 60.5 105 37.1
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.3e-07 60.1 121 41.3
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.3e-07 60.1 121 41.3
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 1.8e-07 59.7 58 51.7
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 2.3e-07 59.3 108 37.0
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 2.3e-07 59.3 108 37.0
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 3.0e-07 58.9 118 35.6
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 3.0e-07 58.9 119 41.2
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 3.0e-07 58.9 58 58.6
Lsat_1_v5_gn_7_105741 Lactuca sativa HOM05D007708 ORTHO05D009506 3.9e-07 58.5 74 52.7
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 3.9e-07 58.5 97 46.4
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 5.1e-07 58.2 102 42.2
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 6.7e-07 57.8 109 42.2
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 6.7e-07 57.8 109 42.2
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 6.7e-07 57.8 84 41.7
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 8.7e-07 57.4 111 36.9
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 8.7e-07 57.4 109 35.8
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 8.7e-07 57.4 108 38.9
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.1e-06 57.0 102 40.2
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 1.5e-06 56.6 77 45.5
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 1.5e-06 56.6 77 45.5
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 1.5e-06 56.6 77 45.5
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.9e-06 56.2 105 40.0
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.9e-06 56.2 102 43.1
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 1.9e-06 56.2 101 41.6
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 2.5e-06 55.8 77 45.5
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 2.5e-06 55.8 77 45.5
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 2.5e-06 55.8 77 45.5
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 2.5e-06 55.8 45 57.8
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 3.3e-06 55.5 109 40.4
Nn2g10233 Nelumbo nucifera HOM05D007708 ORTHO05D009506 3.3e-06 55.5 42 64.3
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 4.3e-06 55.1 112 41.1
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 4.3e-06 55.1 104 40.4
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 4.3e-06 55.1 104 40.4
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 4.3e-06 55.1 112 41.1
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 4.3e-06 55.1 104 40.4
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 4.3e-06 55.1 112 41.1
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 7.4e-06 54.3 111 37.8
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 7.4e-06 54.3 121 34.7
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 9.6e-06 53.9 108 34.3


User provided reference genes

Program Settings