Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 4.6e-244 847.4 417 100.0
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.8e-174 615.1 417 71.2
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.9e-173 612.8 419 71.1
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.6e-172 608.6 419 70.9
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 2.1e-164 582.8 418 71.8
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.0e-158 563.9 386 72.0
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 7.3e-149 531.2 417 65.2
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.2e-148 530.4 426 63.1
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.0e-147 527.3 425 62.8
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.4e-147 526.9 417 62.6
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 2.6e-146 522.7 427 62.5
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 2.4e-144 516.2 416 61.8
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 3.2e-144 515.8 428 59.3
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.3e-142 510.4 425 60.7
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.3e-142 509.6 416 61.5
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 8.6e-142 507.7 416 61.5
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.3e-141 505.4 416 61.3
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 2.1e-140 503.1 426 59.4
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 8.1e-140 501.1 428 59.3
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 1.1e-139 500.7 428 61.2
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 1.1e-139 500.7 421 59.6
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 8.9e-139 497.7 427 59.7
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.8e-138 495.0 422 60.2
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 7.5e-138 494.6 416 60.6
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 4.9e-137 491.9 416 59.1
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 6.4e-137 491.5 417 60.0
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 6.4e-137 491.5 423 59.8
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 5.4e-136 488.4 424 58.7
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.6e-135 486.9 426 58.0
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.7e-135 486.1 416 58.2
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 3.0e-134 482.6 428 58.6
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 3.9e-134 482.3 396 61.9
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.6e-134 481.1 410 60.5
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.1e-133 480.7 426 58.0
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.5e-133 480.3 426 57.7
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 1.9e-133 479.9 416 58.7
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.3e-133 478.8 426 57.7
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 9.5e-133 477.6 426 57.5
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 1.2e-132 477.2 389 60.9
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 1.1e-131 474.2 416 57.9
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.4e-130 469.2 414 56.3
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.3e-129 467.2 401 59.1
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.3e-129 467.2 426 56.1
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 4.6e-127 458.8 384 62.0
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.0e-126 457.6 426 55.4
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 2.3e-126 456.4 420 57.1
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 5.6e-125 451.8 421 56.5
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 6.2e-124 448.4 370 62.2
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.8e-123 446.8 429 53.4
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.6e-122 443.0 429 53.1
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 3.4e-122 442.6 419 56.8
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 7.6e-122 441.4 398 55.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 7.6e-122 441.4 427 56.0
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.4e-120 437.2 428 54.2
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 7.1e-120 434.9 422 52.8
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 9.3e-120 434.5 426 54.9
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 2.3e-118 429.9 392 56.1
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 3.6e-116 422.5 403 56.6
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 3.1e-115 419.5 419 53.2
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.2e-114 417.5 387 55.3
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.0e-114 416.8 420 50.2
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 3.4e-114 416.0 404 52.2
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 4.5e-114 415.6 394 54.8
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 9.9e-114 414.5 391 55.5
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.3e-113 414.1 430 52.1
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 2.9e-113 412.9 393 52.2
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 6.4e-113 411.8 416 53.8
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.9e-112 410.2 413 50.4
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 2.4e-112 409.8 437 50.8
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 3.2e-112 409.5 418 52.9
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 9.3e-112 407.9 406 51.7
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 8.7e-110 401.4 411 52.3
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.1e-109 401.0 431 51.3
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.8e-108 396.4 398 50.8
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 3.7e-108 396.0 394 52.3
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 8.1e-108 394.8 407 50.6
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 9.0e-107 391.3 405 51.6
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 4.5e-106 389.0 394 50.8
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.7e-105 387.1 419 48.9
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 6.4e-105 385.2 397 52.1
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 4.2e-104 382.5 394 50.8
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 5.5e-104 382.1 392 51.3
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 7.1e-104 381.7 394 50.3
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 9.3e-104 381.3 386 52.8
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 9.3e-104 381.3 392 51.3
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 9.3e-104 381.3 395 50.4
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 2.7e-103 379.8 395 50.1
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 3.3e-101 372.9 386 50.8
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.3e-100 370.9 371 54.7
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 1.6e-100 370.5 386 50.8
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 1.1e-99 367.9 386 50.8
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.4e-99 367.5 372 54.6
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 1.8e-99 367.1 386 50.0
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.9e-99 365.2 320 57.8
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 9.0e-99 364.8 372 52.2
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 2.0e-98 363.6 419 50.8
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.0e-97 361.3 370 53.0
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.1e-96 357.8 368 53.8
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.2e-95 354.4 368 52.4
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.6e-90 336.7 255 67.1
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 2.5e-85 320.1 398 44.5
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 4.3e-85 319.3 305 53.4
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 7.4e-85 318.5 413 44.8
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.8e-84 316.6 288 56.6
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 2.5e-80 303.5 253 60.1
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.3e-77 293.1 281 52.0
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 4.5e-74 282.7 266 56.4
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 1.1e-72 278.1 301 47.5
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 6.1e-71 272.3 229 58.1
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 7.0e-67 258.8 207 63.8
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 1.3e-65 254.6 198 61.6
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.6e-63 247.7 331 44.1
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.0e-62 245.0 318 43.7
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 8.8e-62 241.9 176 68.2
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.2e-61 241.5 417 36.7
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-57 227.3 170 66.5
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 6.1e-55 219.2 209 55.0
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 2.3e-54 217.2 387 33.3
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 5.7e-53 212.6 201 51.7
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-50 204.9 319 38.9
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 9.5e-48 195.3 180 53.9
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 6.1e-47 192.6 252 43.7
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.3e-46 190.7 225 48.4
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.9e-46 188.7 270 40.7
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-45 188.3 136 66.2
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.8e-39 167.2 417 30.2
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.7e-36 157.9 195 47.2
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 4.9e-36 156.4 422 29.4
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-34 151.4 110 65.5
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.6e-33 146.0 111 64.0
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.8e-30 137.9 180 43.3
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.3e-30 137.5 106 61.3
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.0e-25 122.1 109 55.0
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.5e-24 115.5 110 52.7
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.7e-23 113.2 110 51.8
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 3.2e-19 100.5 91 49.5
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-13 82.0 84 50.0
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.1e-11 72.8 63 54.0
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 9.2e-11 72.4 93 39.8
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 2.1e-10 71.2 90 46.7
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 6.0e-10 69.7 53 58.5
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 5.6e-08 63.2 54 53.7


User provided reference genes

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