Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032499 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 2.0e-68 262.3 133 100.0
CSS0020404 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 6.9e-61 237.3 133 91.7
CSS0031109 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 1.3e-46 189.9 115 85.2
Rhsim04G0036900 Rhododendron simsii HOM05D006832 ORTHO05D008292 5.2e-40 167.9 112 75.9
Rhsim04G0036600 Rhododendron simsii HOM05D006832 ORTHO05D008292 8.8e-40 167.2 112 75.9
RhsimUnG0013300 Rhododendron simsii HOM05D006832 ORTHO05D008292 2.6e-39 165.6 112 75.0
QL08p024452 Quercus lobata HOM05D006832 ORTHO05D008292 5.7e-39 164.5 115 73.0
Actinidia03616 Actinidia chinensis HOM05D006832 ORTHO05D008292 7.4e-39 164.1 112 78.6
Dinv15008 Davidia involucrata HOM05D006832 ORTHO05D008292 9.7e-39 163.7 109 77.1
vmacro09407 Vaccinium macrocarpon HOM05D006832 ORTHO05D008292 1.3e-38 163.3 112 75.9
Nitab4.5_0000383g0030 Nicotiana tabacum HOM05D006832 ORTHO05D008292 8.2e-38 160.6 109 72.5
GSVIVG01014166001 Vitis vinifera HOM05D006832 ORTHO05D008292 8.2e-38 160.6 112 72.3
CiPaw.11G157300 Carya illinoinensis HOM05D006832 ORTHO05D008292 1.8e-37 159.5 109 73.4
Peaxi162Scf00692g00121 Petunia axillaris HOM05D006832 ORTHO05D008292 4.1e-37 158.3 108 72.2
Sopen10g003400 Solanum pennellii HOM05D006832 ORTHO05D008292 9.1e-37 157.1 109 68.8
Manes.15G097000 Manihot esculenta HOM05D006832 ORTHO05D008292 1.6e-36 156.4 109 72.5
PGSC0003DMG403021297 Solanum tuberosum HOM05D006832 ORTHO05D008292 2.0e-36 156.0 109 68.8
Cc05_g10910 Coffea canephora HOM05D006832 ORTHO05D008292 5.9e-36 154.5 111 68.5
Solyc10g007460.4 Solanum lycopersicum HOM05D006832 ORTHO05D008292 5.9e-36 154.5 109 67.9
Atru.chr2.2055_Atru.chr2.2057 Acer truncatum HOM05D006832 ORTHO05D008292 7.7e-36 154.1 108 72.2
PGSC0003DMG402021297 Solanum tuberosum HOM05D006832 ORTHO05D008292 7.7e-36 154.1 109 69.7
Solyc10g007440.3 Solanum lycopersicum HOM05D006832 ORTHO05D008292 1.7e-35 152.9 109 68.8
Cfa019523 Carpinus fangiana HOM05D006832 ORTHO05D008292 5.0e-35 151.4 109 70.6
Sopen10g003390 Solanum pennellii HOM05D006832 ORTHO05D008292 8.5e-35 150.6 108 68.5
Potri.001G376900 Populus trichocarpa HOM05D006832 ORTHO05D008292 1.1e-34 150.2 109 71.6
RcHm_v2.0_Chr5g0030051 Rosa chinensis HOM05D006832 ORTHO05D008292 2.1e-33 146.0 123 61.8
Sabra16G0248300 Salix brachista HOM05D006832 ORTHO05D008292 3.6e-33 145.2 109 67.9
Cpa.g.sc77.49 Carica papaya HOM05D006832 ORTHO05D008292 4.7e-33 144.8 109 67.0
MELO3C025659.2 Cucumis melo HOM05D006832 ORTHO05D008292 4.7e-33 144.8 109 62.4
Sc16g0007700 Simmondsia chinensis HOM05D006832 ORTHO05D008292 2.3e-32 142.5 109 61.5
Sed0018751 Sechium edule HOM05D006832 ORTHO05D008292 4.0e-32 141.7 109 63.3
TWI38G0771 Tripterygium wilfordii HOM05D006832 ORTHO05D008292 6.8e-32 141.0 111 64.9
Ciclev10020819m.g Citrus clementina HOM05D006832 ORTHO05D008292 1.5e-31 139.8 109 64.2
ClCG11G017270 Citrullus lanatus HOM05D006832 ORTHO05D008292 3.4e-31 138.7 109 59.6
CsaV3_4G032920 Cucumis sativus L. HOM05D006832 ORTHO05D008292 3.4e-31 138.7 109 58.7
MD03G1246100 Malus domestica HOM05D006832 ORTHO05D008292 3.4e-31 138.7 108 63.9
CANSAT56G2937 Cannabis sativa HOM05D006832 ORTHO05D008292 5.7e-31 137.9 109 60.6
Lsat_1_v5_gn_9_100561 Lactuca sativa HOM05D006832 ORTHO05D008292 9.7e-31 137.1 106 66.0
DCAR_013268 Daucus carota HOM05D006832 ORTHO05D008292 2.2e-30 136.0 111 63.1
FvH4_3g18000 Fragaria vesca HOM05D006832 ORTHO05D008292 2.2e-30 136.0 122 59.0
Prupe.4G158600 Prunus persica HOM05D006832 ORTHO05D008292 2.8e-30 135.6 109 63.3
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 6.3e-30 134.4 122 58.2
ECA240G3607 Erigeron canadensis HOM05D000109 ORTHO05D000210 8.3e-30 134.0 112 59.8
Lalb_Chr25g0285711 Lupinus albus HOM05D006832 ORTHO05D008292 1.1e-29 133.7 110 60.0
FAN25G0879 Fragaria x ananassa HOM05D006832 ORTHO05D008292 1.8e-29 132.9 129 56.6
FAN21G3714 Fragaria x ananassa HOM05D006832 ORTHO05D008292 3.1e-29 132.1 125 58.4
Migut.M00714 Erythranthe guttata HOM05D006832 ORTHO05D008292 1.2e-28 130.2 109 60.6
Eucgr.F03237 Eucalyptus grandis HOM05D006832 ORTHO05D008292 1.2e-28 130.2 109 56.9
Lj3g0027307 Lotus japonicus HOM05D006832 ORTHO05D008292 1.2e-28 130.2 109 59.6
Thecc.07G123300 Theobroma cacao HOM05D006832 ORTHO05D008292 1.2e-28 130.2 108 58.3
HanXRQChr13g0389661 Helianthus annuus HOM05D006832 ORTHO05D008292 2.0e-28 129.4 115 59.1
THA.LOC104810427 Tarenaya hassleriana HOM05D006832 ORTHO05D008292 3.5e-28 128.6 109 56.9
arahy.Tifrunner.gnm1.ann1.U4EZEG Arachis hypogaea HOM05D006832 ORTHO05D008292 4.5e-28 128.3 109 58.7
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 7.7e-28 127.5 88 71.6
CARHR043680 Cardamine hirsuta HOM05D006832 ORTHO05D008292 1.0e-27 127.1 109 56.9
Gorai.013G174800 Gossypium raimondii HOM05D006832 ORTHO05D008292 1.3e-27 126.7 109 57.8
Carub.0001s4265 Capsella rubella HOM05D006832 ORTHO05D008292 1.7e-27 126.3 109 56.9
AL1G62020 Arabidopsis lyrata HOM05D006832 ORTHO05D008292 2.2e-27 125.9 109 56.9
AT1G53460 Arabidopsis thaliana HOM05D006832 ORTHO05D008292 2.2e-27 125.9 109 56.9
arahy.Tifrunner.gnm1.ann1.LUID63 Arachis hypogaea HOM05D006832 ORTHO05D008292 5.0e-27 124.8 109 56.9
Gohir.D13G154700 Gossypium hirsutum HOM05D006832 ORTHO05D008292 6.5e-27 124.4 109 56.9
Aa31LG10G1740 Aethionema arabicum HOM05D006832 ORTHO05D008292 8.5e-27 124.0 109 56.9
BcaC01g01392 Brassica carinata HOM05D006832 ORTHO05D008292 8.5e-27 124.0 109 55.0
A08p01560 Brassica napus HOM05D006832 ORTHO05D008292 8.5e-27 124.0 109 55.0
BraA08t32210Z Brassica rapa HOM05D006832 ORTHO05D008292 8.5e-27 124.0 109 55.0
Thhalv10011680m.g Eutrema salsugineum HOM05D006832 ORTHO05D008292 8.5e-27 124.0 109 56.0
MSTRG.14973 Avicennia marina HOM05D006832 ORTHO05D008292 1.1e-26 123.6 109 56.0
MSTRG.6686 Avicennia marina HOM05D006832 ORTHO05D008292 1.1e-26 123.6 108 55.6
BcaB04g17079 Brassica carinata HOM05D006832 ORTHO05D008292 1.1e-26 123.6 109 55.0
C03p91530 Brassica napus HOM05D006832 ORTHO05D008292 1.1e-26 123.6 109 55.0
BolC3t21470H Brassica oleracea HOM05D006832 ORTHO05D008292 1.1e-26 123.6 109 55.0
Nn3g21068 Nelumbo nucifera HOM05D006832 ORTHO05D008292 1.1e-26 123.6 108 58.3
A08p01660 Brassica napus HOM05D006832 ORTHO05D008292 1.5e-26 123.2 109 55.0
BraA08t32219Z Brassica rapa HOM05D006832 ORTHO05D008292 1.5e-26 123.2 109 55.0
Sp1g40000 Schrenkiella parvula HOM05D006832 ORTHO05D008292 1.5e-26 123.2 109 55.0
Gohir.A13G150400 Gossypium hirsutum HOM05D006832 ORTHO05D008292 2.5e-26 122.5 109 56.0
TAR627G1032 Trochodendron aralioides HOM05D006832 ORTHO05D008292 5.5e-26 121.3 108 61.1
Gorai.007G327100 Gossypium raimondii HOM05D006832 ORTHO05D008292 1.6e-25 119.8 108 55.6
TPR.G13159 Trifolium pratense HOM05D006832 ORTHO05D008292 1.6e-25 119.8 108 56.5
Gohir.D11G305300 Gossypium hirsutum HOM05D006832 ORTHO05D008292 2.1e-25 119.4 108 55.6
Glyma.13G266700 Glycine max HOM05D006832 ORTHO05D008292 2.7e-25 119.0 110 57.3
Gohir.A11G287600 Gossypium hirsutum HOM05D006832 ORTHO05D008292 2.7e-25 119.0 108 55.6
PGR031G1976 Punica granatum HOM05D006832 ORTHO05D008292 6.1e-25 117.9 112 55.4
Phvul.005G079500 Phaseolus vulgaris HOM05D006832 ORTHO05D008292 1.4e-24 116.7 109 53.2
Medtr2g075470 Medicago truncatula HOM05D006832 ORTHO05D008292 1.8e-24 116.3 108 51.9
Gohir.A11G288300 Gossypium hirsutum HOM05D006832 ORTHO05D008292 3.0e-24 115.5 108 53.7
Psat5g234400 Pisum sativum HOM05D006832 ORTHO05D008292 4.0e-24 115.2 111 51.4
SHI27646 Sapria himalayana HOM05D006832 ORTHO05D008292 1.2e-23 113.6 109 53.2
Ca_03944_v3 Cicer arietinum L. HOM05D006832 ORTHO05D008292 2.6e-23 112.5 113 49.6
VMungo1080G1450 Vigna mungo HOM05D006832 ORTHO05D008292 5.7e-23 111.3 107 54.2
unitig_899.g15298 Utricularia gibba HOM05D006832 ORTHO05D008292 7.5e-23 110.9 108 52.8
HPP92_005191 Vanilla planifolia HOM05D006832 ORTHO05D008292 1.7e-22 109.8 108 52.8
Zm00001eb120760 Zea mays HOM05D006832 ORTHO05D008292 1.7e-22 109.8 107 50.5
Aqoxy1G01968 Aquilegia oxysepala HOM05D006832 ORTHO05D008292 2.8e-22 109.0 109 53.2
Medtr2g075450 Medicago truncatula HOM05D006832 ORTHO05D008292 1.4e-21 106.7 109 52.3
VMungo1080G1649 Vigna mungo HOM05D006832 ORTHO05D008292 1.4e-21 106.7 107 51.4
Os01g0203300 Oryza sativa ssp. japonica HOM05D006832 ORTHO05D008292 1.8e-21 106.3 108 47.2
ATR0127G025 Amborella trichopoda HOM05D006832 ORTHO05D008292 9.1e-21 104.0 108 52.8
MBI07_g00466_MAGBIO Magnolia biondii HOM05D006832 ORTHO05D008292 1.3e-19 100.1 107 49.5
Aqoxy4G00218 Aquilegia oxysepala HOM05D006832 ORTHO05D008292 2.3e-19 99.4 104 47.1
CDE10G0461 Ceratophyllum demersum HOM05D000680 ORTHO05D000738 8.9e-16 87.4 108 41.7
SGA_v2.0_scaffold73G24393 Striga asiatica HOM05D006832 ORTHO05D008292 2.0e-15 86.3 123 38.2
Solyc12g044440.2 Solanum lycopersicum HOM05D006832 ORTHO05D008292 5.2e-08 61.6 36 77.8
Nn4g24243 Nelumbo nucifera HOM05D001845 ORTHO05D001878 8.9e-08 60.8 123 34.1
Lj2g0018293 Lotus japonicus HOM05D001845 ORTHO05D001878 1.2e-07 60.5 112 34.8
PSO017G4830 Papaver somniferum HOM05D001845 ORTHO05D001878 1.5e-07 60.1 108 32.4
SalBow1G6294 Salvia bowleyana HOM05D006832 ORTHO05D008292 1.5e-07 60.1 108 37.0
SalBow8G1352 Salvia bowleyana HOM05D006832 ORTHO05D008292 1.5e-07 60.1 108 37.0
Aqoxy3G04104 Aquilegia oxysepala HOM05D001845 ORTHO05D001878 2.6e-07 59.3 123 32.5
PSO478G0455 Papaver somniferum HOM05D001845 ORTHO05D001878 2.6e-07 59.3 111 35.1
Pp3c17_18380 Physcomitrium patens HOM05D001845 ORTHO05D001878 2.6e-07 59.3 108 33.3
Pp3c17_18383 Physcomitrium patens HOM05D001845 ORTHO05D001878 2.6e-07 59.3 108 33.3
CiPaw.16G093600 Carya illinoinensis HOM05D001845 ORTHO05D001878 3.4e-07 58.9 115 33.0
Peaxi162Scf00376g00834 Petunia axillaris HOM05D001845 ORTHO05D001878 4.4e-07 58.5 119 31.9
SEGI_35734 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 4.4e-07 58.5 112 32.1
SEGI_37440 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 4.4e-07 58.5 112 32.1
Sopen08g005500 Solanum pennellii HOM05D001845 ORTHO05D001878 4.4e-07 58.5 117 32.5
Cfa019654 Carpinus fangiana HOM05D001845 ORTHO05D001878 5.8e-07 58.2 116 33.6
Manes.06G006000 Manihot esculenta HOM05D001845 ORTHO05D001878 5.8e-07 58.2 115 33.0
PSO017G4311 Papaver somniferum HOM05D001845 ORTHO05D001878 5.8e-07 58.2 109 36.7
SEGI_07835 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 5.8e-07 58.2 112 31.2
PGSC0003DMG400025225 Solanum tuberosum HOM05D001845 ORTHO05D001878 5.8e-07 58.2 117 33.3
SEGI_40519 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 7.5e-07 57.8 112 31.2
Solyc08g014510.3 Solanum lycopersicum HOM05D001845 ORTHO05D001878 7.5e-07 57.8 117 32.5
PSO478G3005 Papaver somniferum HOM05D001845 ORTHO05D001878 9.8e-07 57.4 119 33.6
Psat6g045560 Pisum sativum HOM05D001845 ORTHO05D001878 9.8e-07 57.4 104 34.6
Hund10460 Selenicereus undatus HOM05D006832 ORTHO05D008292 9.8e-07 57.4 40 62.5
QL10p029677 Quercus lobata HOM05D001845 ORTHO05D001878 1.3e-06 57.0 114 33.3
ATR1149G004 Amborella trichopoda HOM05D001845 ORTHO05D001878 1.7e-06 56.6 108 36.1
Haze_18858 Corylus avellana HOM05D001845 ORTHO05D001878 1.7e-06 56.6 116 32.8
GSVIVG01008444001 Vitis vinifera HOM05D001845 ORTHO05D001878 1.7e-06 56.6 122 32.8
Duzib068G1216 Durio zibethinus HOM05D001845 ORTHO05D001878 2.2e-06 56.2 123 30.9
TAR629G2394 Trochodendron aralioides HOM05D001845 ORTHO05D001878 2.2e-06 56.2 123 31.7
arahy.Tifrunner.gnm1.ann1.8ET3C3 Arachis hypogaea HOM05D001845 ORTHO05D001878 2.9e-06 55.8 121 32.2
BolC6t39530H Brassica oleracea HOM05D001845 ORTHO05D001878 2.9e-06 55.8 117 31.6
CAN.G843.54 Capsicum annuum HOM05D001845 ORTHO05D001878 2.9e-06 55.8 115 33.0
BcaC08g46522 Brassica carinata HOM05D001845 ORTHO05D001878 3.7e-06 55.5 117 31.6
A07p37090 Brassica napus HOM05D001845 ORTHO05D001878 3.7e-06 55.5 117 31.6
C06p44690 Brassica napus HOM05D001845 ORTHO05D001878 3.7e-06 55.5 117 31.6
BraA07t31271Z Brassica rapa HOM05D001845 ORTHO05D001878 3.7e-06 55.5 117 31.6
SGA_v2.0_scaffold19G08822 Striga asiatica HOM05D001845 ORTHO05D001878 3.7e-06 55.5 119 30.3
Actinidia06834 Actinidia chinensis HOM05D001845 ORTHO05D001878 4.9e-06 55.1 123 30.9
Medtr1g032260 Medicago truncatula HOM05D001845 ORTHO05D001878 4.9e-06 55.1 104 34.6
Sopen12g022760 Solanum pennellii HOM05D006832 ORTHO05D008292 4.9e-06 55.1 42 61.9
TAR374G1479 Trochodendron aralioides HOM05D001845 ORTHO05D001878 4.9e-06 55.1 116 31.9
ATR0753G124 Amborella trichopoda HOM05D001845 ORTHO05D001878 6.4e-06 54.7 118 32.2
ECA236G3954 Erigeron canadensis HOM05D001845 ORTHO05D001878 6.4e-06 54.7 111 31.5
PSO210G5619 Papaver somniferum HOM05D001845 ORTHO05D001878 6.4e-06 54.7 111 32.4
SEGI_38156 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 6.4e-06 54.7 111 31.5
TWI15G0490 Tripterygium wilfordii HOM05D001845 ORTHO05D001878 6.4e-06 54.7 126 32.5
TAR622G0227 Trochodendron aralioides HOM05D001845 ORTHO05D001878 6.4e-06 54.7 120 32.5
CSS0024731 Camellia sinensis var. sinensis HOM05D001845 ORTHO05D001878 8.3e-06 54.3 111 32.4
Carub.0002s1738 Capsella rubella HOM05D001845 ORTHO05D001878 8.3e-06 54.3 112 31.2
Gohir.A01G147618 Gossypium hirsutum HOM05D001845 ORTHO05D001878 8.3e-06 54.3 117 31.6
TWI60G0176 Tripterygium wilfordii HOM05D001845 ORTHO05D001878 8.3e-06 54.3 114 31.6
VMungo1215G0848 Vigna mungo HOM05D001845 ORTHO05D001878 8.3e-06 54.3 113 35.4


User provided reference genes

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