Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 3.4e-98 361.7 187 100.0
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 3.1e-67 258.8 144 93.1
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 4.5e-66 255.0 144 92.4
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.3e-65 253.4 142 94.4
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.5e-64 250.0 142 90.8
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 5.5e-64 248.1 140 92.9
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 7.2e-64 247.7 142 90.1
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 9.4e-64 247.3 143 89.5
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 2.1e-63 246.1 139 92.1
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 3.6e-63 245.4 140 91.4
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 4.7e-63 245.0 140 90.7
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.1e-63 244.6 139 89.9
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.1e-63 244.6 139 89.9
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 6.1e-63 244.6 139 89.9
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 8.0e-63 244.2 140 90.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.0e-62 243.8 139 90.6
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.0e-62 243.8 139 90.6
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 1.0e-62 243.8 140 90.0
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 3.0e-62 242.3 142 88.0
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 4.0e-62 241.9 140 88.6
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 5.2e-62 241.5 139 89.9
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 5.2e-62 241.5 143 88.1
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 6.7e-62 241.1 141 89.4
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 1.1e-61 240.4 143 86.7
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 2.0e-61 239.6 142 86.6
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.6e-61 239.2 136 91.2
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 4.4e-61 238.4 157 82.2
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 9.7e-61 237.3 139 88.5
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.3e-60 236.9 140 87.1
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.7e-60 236.5 141 85.8
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 1.7e-60 236.5 141 87.2
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 2.2e-60 236.1 140 89.3
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 2.2e-60 236.1 143 86.7
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 2.2e-60 236.1 143 86.7
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.8e-60 235.7 155 78.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 3.7e-60 235.3 140 86.4
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 3.7e-60 235.3 141 85.8
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 4.8e-60 235.0 141 87.9
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 8.2e-60 234.2 138 89.9
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.1e-59 233.8 139 88.5
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.1e-59 233.8 141 85.1
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.8e-59 233.0 138 89.1
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.4e-59 232.6 141 87.2
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 3.1e-59 232.3 140 87.1
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 4.1e-59 231.9 140 85.7
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.1e-59 231.9 138 89.1
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 4.1e-59 231.9 141 84.4
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 5.3e-59 231.5 138 88.4
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 9.1e-59 230.7 143 84.6
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 9.1e-59 230.7 140 87.9
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 9.1e-59 230.7 141 83.7
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.6e-58 229.9 134 88.8
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 2.0e-58 229.6 139 84.9
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.6e-58 229.2 141 85.8
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 4.5e-58 228.4 137 88.3
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 4.5e-58 228.4 139 84.9
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 4.5e-58 228.4 139 84.9
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.5e-58 228.4 139 84.9
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 5.9e-58 228.0 141 82.3
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.3e-57 226.9 138 85.5
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.3e-57 226.9 140 85.7
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-57 226.5 144 84.0
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.7e-57 226.5 141 85.1
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 2.2e-57 226.1 139 84.9
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.9e-57 225.7 139 84.2
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.9e-57 225.7 140 83.6
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.8e-57 225.3 156 78.8
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 5.0e-57 224.9 140 85.0
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 5.0e-57 224.9 156 78.2
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 6.5e-57 224.6 140 85.0
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 8.5e-57 224.2 134 86.6
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.1e-56 223.8 141 84.4
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.1e-56 223.8 142 81.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.5e-56 223.4 145 80.0
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 1.9e-56 223.0 140 82.1
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.5e-56 222.6 140 83.6
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.5e-56 222.6 140 83.6
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 3.2e-56 222.2 140 82.9
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.2e-56 222.2 142 82.4
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.2e-56 222.2 147 77.6
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.2e-56 222.2 141 84.4
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 3.2e-56 222.2 141 83.0
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 3.2e-56 222.2 148 81.1
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 4.2e-56 221.9 140 86.4
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 4.2e-56 221.9 139 84.9
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 4.2e-56 221.9 140 83.6
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 5.5e-56 221.5 144 82.6
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 5.5e-56 221.5 140 84.3
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 7.2e-56 221.1 145 80.0
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.2e-55 220.3 141 81.6
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.6e-55 219.9 142 82.4
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.6e-55 219.9 142 82.4
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.6e-55 219.9 142 82.4
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.6e-55 219.9 142 82.4
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.6e-55 219.9 143 79.7
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.1e-55 219.5 140 82.1
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 3.6e-55 218.8 143 79.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 3.6e-55 218.8 143 79.0
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 3.6e-55 218.8 141 81.6
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 6.1e-55 218.0 141 80.9
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 6.1e-55 218.0 146 78.8
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 6.1e-55 218.0 141 79.4
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.0e-54 217.2 141 83.0
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.0e-54 217.2 141 83.0
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 1.4e-54 216.9 149 75.8
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.8e-54 216.5 153 75.8
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.3e-54 216.1 115 99.1
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.3e-54 216.1 143 80.4
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.3e-54 216.1 177 68.9
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 4.0e-54 215.3 139 81.3
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 5.2e-54 214.9 153 74.5
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 5.2e-54 214.9 135 83.0
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 6.8e-54 214.5 140 82.1
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 6.8e-54 214.5 139 82.7
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 6.8e-54 214.5 141 79.4
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 8.8e-54 214.2 140 82.1
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.0e-53 213.0 140 81.4
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 4.4e-53 211.8 140 82.9
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.3e-52 210.3 153 73.9
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.2e-52 209.5 115 93.9
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.2e-52 209.5 144 78.5
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 3.7e-52 208.8 145 77.9
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 1.4e-51 206.8 148 79.1
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 1.8e-51 206.5 139 80.6
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.2e-50 203.8 145 75.9
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 1.2e-50 203.8 137 78.1
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 3.5e-50 202.2 143 74.8
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 2.2e-49 199.5 112 92.9
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 2.2e-49 199.5 140 77.1
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 5.0e-49 198.4 115 90.4
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 5.0e-49 198.4 115 90.4
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.2e-47 193.7 113 89.4
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.1e-47 191.4 113 87.6
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 6.8e-46 188.0 119 82.4
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.0e-45 186.4 138 75.4
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 9.8e-45 184.1 137 68.6
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.7e-44 183.3 143 69.2
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.7e-44 183.3 148 66.9
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.7e-44 183.3 107 87.9
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 2.8e-44 182.6 112 86.6
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 4.9e-44 181.8 132 72.0
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.1e-43 180.6 162 66.7
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.1e-43 180.6 142 70.4
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.0e-42 176.4 108 82.4
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 7.7e-42 174.5 294 41.5
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 7.7e-42 174.5 140 67.9
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.9e-41 172.6 139 69.1
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.9e-41 172.6 139 69.1
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 5.6e-40 168.3 155 65.8
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 2.1e-39 166.4 99 85.9
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.7e-39 165.2 143 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 1.2e-37 160.6 115 73.0
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 7.5e-37 157.9 113 72.6
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 9.8e-37 157.5 111 72.1
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 7.3e-32 141.4 106 73.6
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 4.9e-28 128.6 75 85.3
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 1.9e-27 126.7 109 59.6
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.0e-27 124.8 71 85.9
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 2.3e-25 119.8 135 48.9
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 3.6e-23 112.5 99 65.7
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 3.6e-23 112.5 91 69.2
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.4e-22 110.5 85 70.6
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 5.2e-22 108.6 86 72.1
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 3.4e-21 105.9 86 70.9
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 3.4e-21 105.9 86 70.9
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.5e-16 90.5 89 58.4
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 5.8e-13 78.6 44 90.9
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 2.2e-12 76.6 49 81.6
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 4.9e-12 75.5 47 80.9
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 1.0e-09 67.8 39 84.6
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 8.1e-07 58.2 83 45.8
AagrBONN_evm.TU.Sc2ySwM_114.14 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.1e-06 56.2 90 43.3
AagrBONN_evm.TU.Sc2ySwM_114.15 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.1e-06 56.2 90 43.3
AagrBONN_evm.TU.Sc2ySwM_340.1461 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.1e-06 56.2 90 43.3
AagrBONN_evm.TU.Sc2ySwM_368.15 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.1e-06 56.2 90 43.3
AagrBONN_evm.TU.Sc2ySwM_83.9 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.1e-06 56.2 90 43.3
AagrBONN_evm.TU.Sc2ySwM_340.464 Anthoceros agrestis HOM05D010958 ORTHO05D018301 4.0e-06 55.8 124 37.1
AagrBONN_evm.TU.Sc2ySwM_228.5940 Anthoceros agrestis HOM05D010958 ORTHO05D004381 6.8e-06 55.1 88 43.2
AagrBONN_evm.TU.Sc2ySwM_362.2265 Anthoceros agrestis HOM05D010958 ORTHO05D004381 8.9e-06 54.7 85 42.4


User provided reference genes

Program Settings