Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1377.5 713 100.0
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1351.7 713 97.8
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1316.6 713 96.1
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1292.7 712 95.1
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1274.6 708 92.1
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1248.4 742 88.9
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1246.1 715 89.1
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1233.0 713 88.1
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1232.6 708 88.1
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1231.9 713 87.7
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1231.9 704 89.2
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1229.2 715 87.4
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1228.8 714 87.8
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1227.6 720 87.6
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1225.7 713 87.0
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1225.3 705 89.2
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1224.9 709 88.2
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1224.2 705 87.2
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1223.0 705 88.9
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1219.5 713 87.0
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1217.2 706 87.8
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1217.2 704 87.4
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1217.2 711 86.5
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1215.7 713 86.5
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1214.1 709 88.3
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1211.8 714 86.7
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1210.3 705 88.7
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1210.3 714 86.1
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1209.1 700 86.7
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1208.7 706 87.0
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1208.4 715 86.6
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1207.6 704 86.6
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1207.6 716 88.3
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1207.6 702 86.5
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1207.2 710 85.1
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1206.8 705 86.7
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1206.4 711 85.5
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1201.8 700 86.1
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1200.7 702 86.3
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1199.1 732 84.4
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1194.5 696 86.2
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1194.5 701 86.2
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1192.6 692 87.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 719 86.8
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 701 86.7
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1187.2 713 84.9
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1185.6 705 86.4
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1185.2 713 83.9
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1183.3 701 85.9
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1179.1 705 85.5
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1175.2 693 85.7
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1174.8 711 83.8
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1167.5 710 84.4
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1165.2 680 89.0
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1162.1 688 85.5
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1157.5 712 84.1
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1157.5 712 84.1
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1156.4 693 84.4
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1146.7 709 80.7
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1146.0 706 82.0
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1144.0 709 80.7
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1132.5 709 79.8
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1128.6 704 81.8
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1126.7 711 82.1
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1125.5 708 79.9
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1117.8 702 80.6
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 702 80.8
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1115.1 708 81.4
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1113.2 701 80.7
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1112.8 701 80.6
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1112.1 701 80.6
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1111.7 725 81.2
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1110.5 701 80.6
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1110.5 701 80.6
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1109.4 702 82.6
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1108.2 701 79.7
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1107.4 701 80.5
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1107.0 698 80.5
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 740 80.9
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1101.3 702 79.2
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1100.9 699 79.0
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1097.0 698 79.7
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1096.3 655 85.2
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1094.3 698 79.4
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1090.9 693 79.5
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 698 79.1
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 698 79.1
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 698 79.1
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1084.7 618 88.5
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 703 78.1
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 3.4e-311 1071.2 619 87.6
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 9.8e-311 1069.7 695 81.3
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.1e-310 1068.5 717 79.8
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.1e-309 1066.2 690 78.7
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.0e-307 1059.7 685 81.8
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 1.6e-305 1052.4 702 76.6
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.6e-305 1052.4 659 81.8
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 8.0e-305 1050.0 692 76.7
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.8e-304 1048.9 655 80.9
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 5.2e-304 1047.3 686 77.4
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.5e-300 1034.2 704 74.7
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.2e-295 1019.6 714 75.1
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.4e-295 1017.7 704 73.9
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 6.5e-291 1003.8 583 87.5
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 4.2e-290 1001.1 694 74.5
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.6e-287 991.9 569 89.6
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.4e-287 991.1 647 77.1
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 5.0e-283 977.6 541 91.7
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.1e-277 958.0 737 71.8
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 6.6e-267 924.1 698 72.6
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 8.9e-256 887.1 695 67.8
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 8.4e-246 854.0 522 82.2
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.6e-242 841.3 567 75.8
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.2e-236 823.5 538 78.8
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 4.3e-234 815.1 450 92.2
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.8e-214 748.8 555 75.9
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.5e-210 736.1 680 56.5
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 5.3e-208 728.4 620 64.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 5.9e-199 698.4 632 56.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-195 687.2 392 90.1
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.7e-195 684.9 402 87.8
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.1e-181 641.0 517 68.3
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.0e-174 615.5 638 50.5
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.0e-172 608.2 399 83.0
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.3e-165 585.1 639 48.5
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.3e-163 580.1 639 48.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.7e-142 510.8 724 44.9
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.4e-139 501.1 638 42.5
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.9e-137 493.4 630 42.9
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.6e-133 479.2 647 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.8e-131 474.2 624 43.9
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.8e-130 469.2 306 75.8
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.3e-115 419.5 399 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.6e-108 397.9 399 54.1
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.3e-107 392.9 250 81.6
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 5.9e-90 336.3 220 72.3
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.7e-74 282.7 224 69.6
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.2e-62 243.4 171 78.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.1e-56 225.7 130 85.4
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-37 161.8 138 56.5
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.6e-33 146.7 78 92.3
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 7.5e-29 133.3 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.1e-25 120.6 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.8e-23 114.8 59 88.1
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 6.2e-23 113.6 67 86.6
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 1.8e-22 112.1 67 85.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 2.4e-22 111.7 92 62.0
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 6.8e-22 110.2 62 90.3
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 2.6e-21 108.2 61 86.9
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 4.4e-21 107.5 62 88.7
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 8.7e-17 93.2 56 78.6
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

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