Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.9e-43 179.5 144 100.0
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.9e-43 179.5 144 100.0
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 1.5e-21 106.7 95 54.7
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 1.7e-20 103.2 91 56.0
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 2.2e-20 102.8 93 75.3
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 6.4e-20 101.3 92 56.5
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 8.4e-20 100.9 95 54.7
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.2e-19 99.0 130 50.8
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 1.2e-18 97.1 92 56.5
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.6e-18 96.7 96 62.5
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.7e-17 93.2 90 55.6
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 2.3e-17 92.8 92 52.2
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 2.3e-17 92.8 90 56.7
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 2.3e-17 92.8 90 56.7
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 3.0e-17 92.4 92 63.0
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 3.9e-17 92.0 89 51.7
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.5e-16 90.1 92 70.7
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.9e-16 89.7 88 59.1
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.9e-16 89.7 92 58.7
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 2.5e-16 89.4 80 56.2
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 3.3e-16 89.0 95 52.6
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 5.6e-16 88.2 92 51.1
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 1.3e-15 87.0 93 48.4
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.8e-15 85.9 45 86.7
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 4.8e-15 85.1 91 50.5
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 6.2e-15 84.7 92 67.4
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 8.1e-15 84.3 41 87.8
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.4e-14 83.6 47 74.5
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.4e-14 83.6 93 48.4
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.8e-14 83.2 93 48.4
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 3.1e-14 82.4 90 48.9
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 4.0e-14 82.0 94 48.9
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 5.3e-14 81.6 74 52.7
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 5.3e-14 81.6 92 45.7
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.9e-14 81.3 93 47.3
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 9.0e-14 80.9 94 46.8
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 9.0e-14 80.9 141 48.2
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 9.0e-14 80.9 91 67.0
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 9.0e-14 80.9 88 63.6
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 9.0e-14 80.9 47 72.3
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.2e-13 80.5 80 48.8
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.2e-13 80.5 79 45.6
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 1.2e-13 80.5 73 74.0
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.5e-13 80.1 88 64.8
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.5e-13 80.1 88 46.6
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 2.0e-13 79.7 41 78.0
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 2.0e-13 79.7 47 72.3
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.0e-13 79.7 93 52.7
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 2.6e-13 79.3 47 72.3
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 3.4e-13 79.0 80 52.5
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.4e-13 79.0 96 45.8
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 3.4e-13 79.0 90 60.0
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.5e-13 78.6 141 47.5
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 5.8e-13 78.2 93 52.7
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 5.8e-13 78.2 46 67.4
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 7.6e-13 77.8 92 64.1
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 7.6e-13 77.8 72 65.3
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 9.9e-13 77.4 47 70.2
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 9.9e-13 77.4 77 68.8
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.3e-12 77.0 92 44.6
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.3e-12 77.0 93 55.9
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 1.3e-12 77.0 47 70.2
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 1.3e-12 77.0 88 56.8
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.7e-12 76.6 91 47.3
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.7e-12 76.6 42 81.0
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 1.7e-12 76.6 42 81.0
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 1.7e-12 76.6 47 68.1
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 2.2e-12 76.3 94 46.8
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.2e-12 76.3 92 64.1
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.2e-12 76.3 96 50.0
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.2e-12 76.3 92 64.1
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 2.2e-12 76.3 78 64.1
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 2.2e-12 76.3 85 62.4
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 3.8e-12 75.5 94 66.0
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 6.4e-12 74.7 47 66.0
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 6.4e-12 74.7 73 49.3
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 8.4e-12 74.3 92 64.1
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 8.4e-12 74.3 95 63.2
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 8.4e-12 74.3 45 64.4
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.1e-11 73.9 90 64.4
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.1e-11 73.9 70 57.1
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 1.4e-11 73.6 47 63.8
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 1.4e-11 73.6 75 64.0
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.9e-11 73.2 95 63.2
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 2.4e-11 72.8 43 62.8
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.2e-11 72.4 95 62.1
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 3.2e-11 72.4 47 66.0
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 5.4e-11 71.6 45 64.4
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 5.4e-11 71.6 76 53.9
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.6e-10 70.1 95 61.1
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 2.1e-10 69.7 82 42.7
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.5e-10 68.9 41 65.9
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 3.5e-10 68.9 43 62.8
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 4.6e-10 68.6 46 67.4
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 4.6e-10 68.6 98 45.9
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 4.6e-10 68.6 98 45.9
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.6e-10 68.6 82 41.5
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-10 68.6 42 71.4
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-10 68.6 42 71.4
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.6e-10 68.6 42 71.4
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 6.0e-10 68.2 43 60.5
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 6.0e-10 68.2 43 60.5
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.0e-10 68.2 86 39.5
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 6.0e-10 68.2 46 65.2
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 1.3e-09 67.0 41 63.4
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.8e-09 66.6 96 47.9
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.8e-09 66.6 42 61.9
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 3.0e-09 65.9 42 64.3
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 5.1e-09 65.1 79 38.0
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 6.7e-09 64.7 46 60.9
HanXRQChr04g0128351 Helianthus annuus HOM05D001803 ORTHO05D001686 6.7e-09 64.7 29 86.2
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 8.7e-09 64.3 82 40.2
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 1.5e-08 63.5 77 57.1
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 1.9e-08 63.2 38 68.4
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.9e-08 63.2 47 48.9
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.5e-08 62.8 80 36.2
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.5e-08 62.8 80 36.2
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 2.5e-08 62.8 48 54.2
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 3.3e-08 62.4 44 61.4
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 3.3e-08 62.4 44 61.4
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 3.3e-08 62.4 40 57.5
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 4.3e-08 62.0 45 57.8
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 4.3e-08 62.0 36 66.7
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 4.3e-08 62.0 40 60.0
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 7.4e-08 61.2 41 58.5
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 7.4e-08 61.2 47 48.9
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 9.6e-08 60.8 45 60.0
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.3e-07 60.5 43 60.5
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 2.8e-07 59.3 43 51.2
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.8e-07 59.3 45 53.3
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 3.7e-07 58.9 46 54.3
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 4.8e-07 58.5 48 50.0
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 4.8e-07 58.5 50 52.0
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 6.2e-07 58.2 42 52.4
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 6.2e-07 58.2 82 34.1
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 6.2e-07 58.2 78 34.6
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 6.2e-07 58.2 50 48.0
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 6.2e-07 58.2 78 52.6
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 6.2e-07 58.2 46 52.2
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 8.1e-07 57.8 47 51.1
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 8.1e-07 57.8 45 53.3
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 8.1e-07 57.8 48 50.0
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 8.1e-07 57.8 47 53.2
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 1.1e-06 57.4 42 52.4
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.1e-06 57.4 50 50.0
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 1.1e-06 57.4 45 53.3
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.4e-06 57.0 47 53.2
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.4e-06 57.0 47 53.2
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 1.4e-06 57.0 47 48.9
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.8e-06 56.6 42 57.1
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.8e-06 56.6 42 47.6
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.4e-06 56.2 47 51.1
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 2.4e-06 56.2 42 57.1
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 2.4e-06 56.2 47 51.1
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.4e-06 56.2 42 57.1
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 2.4e-06 56.2 48 47.9
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 3.1e-06 55.8 47 48.9
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.1e-06 55.8 47 48.9
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 3.1e-06 55.8 42 57.1
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 3.1e-06 55.8 40 57.5
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 3.1e-06 55.8 42 54.8
MBI04_g44434_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 4.0e-06 55.5 43 48.8
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.0e-06 55.5 47 48.9
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 5.3e-06 55.1 42 54.8
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 6.9e-06 54.7 39 53.8
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 6.9e-06 54.7 40 55.0
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 6.9e-06 54.7 45 51.1
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 9.0e-06 54.3 47 46.8


User provided reference genes

Program Settings