Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 2.0e-68 262.3 135 100.0
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.1e-45 184.9 132 72.7
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.6e-41 172.9 135 68.9
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 7.6e-39 164.1 137 63.5
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.4e-37 159.1 136 61.8
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.1e-36 156.0 139 61.2
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 5.1e-35 151.4 130 62.3
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.6e-34 147.9 129 60.5
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 9.6e-34 147.1 134 61.9
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.2e-33 146.7 137 62.0
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.2e-33 146.7 133 59.4
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.6e-33 146.4 129 59.7
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.6e-33 146.4 129 59.7
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.8e-33 145.6 129 59.7
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 6.2e-33 144.4 126 60.3
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 6.2e-33 144.4 129 59.7
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 8.1e-33 144.1 138 58.7
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.4e-32 143.3 129 57.4
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 5.2e-32 141.4 138 58.0
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 4.4e-31 138.3 130 56.9
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.3e-30 136.7 128 57.0
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 2.9e-30 135.6 136 53.7
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 4.9e-30 134.8 137 57.7
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 8.4e-30 134.0 132 58.3
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.4e-29 133.3 132 56.1
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 3.2e-29 132.1 121 57.9
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 4.2e-29 131.7 138 52.9
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.2e-29 131.7 101 69.3
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.4e-29 131.3 109 65.1
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 9.3e-29 130.6 127 51.2
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 2.7e-28 129.0 123 55.3
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 2.7e-28 129.0 121 58.7
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.5e-28 128.6 130 56.2
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 3.5e-28 128.6 131 53.4
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.6e-28 128.3 132 54.5
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 6.0e-28 127.9 129 55.0
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 7.8e-28 127.5 128 51.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.0e-27 127.1 132 53.8
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.7e-27 126.3 138 50.0
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.7e-27 126.3 129 55.0
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 5.1e-27 124.8 143 51.7
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 6.6e-27 124.4 132 53.8
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 8.7e-27 124.0 133 51.9
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-26 123.6 138 50.0
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.1e-26 123.6 130 46.2
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.1e-26 123.6 130 51.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.5e-26 123.2 138 49.3
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.5e-26 123.2 143 53.1
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 2.5e-26 122.5 138 49.3
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.3e-26 122.1 140 51.4
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 3.3e-26 122.1 131 52.7
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 4.3e-26 121.7 131 47.3
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.3e-26 121.7 129 51.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 9.6e-26 120.6 125 52.8
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.6e-25 119.8 131 51.9
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.6e-25 119.8 130 57.7
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 1.6e-25 119.8 134 47.0
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.6e-25 119.8 135 50.4
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.6e-25 119.8 126 54.8
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.1e-25 119.4 125 48.8
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.1e-25 119.4 138 52.2
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.6e-25 118.6 143 51.0
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 4.8e-25 118.2 129 49.6
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 4.8e-25 118.2 128 53.1
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.2e-25 117.9 130 52.3
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 8.1e-25 117.5 118 55.9
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-24 117.1 140 49.3
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.4e-24 116.7 143 51.0
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.8e-24 116.3 143 49.7
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.8e-24 116.3 132 47.7
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 2.4e-24 115.9 143 50.3
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 3.1e-24 115.5 132 49.2
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.0e-24 115.2 140 48.6
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 5.3e-24 114.8 128 52.3
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 5.3e-24 114.8 129 53.5
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 9.0e-24 114.0 137 47.4
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 2.6e-23 112.5 127 48.8
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.4e-23 112.1 115 56.5
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.5e-23 111.7 115 56.5
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 7.6e-23 110.9 131 49.6
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.3e-22 110.2 130 49.2
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.2e-22 109.4 141 48.2
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 3.8e-22 108.6 137 47.4
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 3.8e-22 108.6 133 49.6
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 3.2e-21 105.5 137 45.3
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 7.1e-21 104.4 127 48.8
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.2e-20 103.6 130 50.8
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 2.7e-20 102.4 126 43.7
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 6.0e-20 101.3 125 46.4
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 6.0e-20 101.3 124 47.6
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.0e-19 100.5 130 43.1
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.8e-19 99.8 122 45.1
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 3.0e-19 99.0 121 53.7
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 5.1e-19 98.2 132 44.7
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 5.1e-19 98.2 130 41.5
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 8.7e-19 97.4 118 50.8
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.5e-18 96.7 104 51.9
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 3.3e-18 95.5 113 50.4
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 3.3e-18 95.5 113 50.4
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 4.3e-18 95.1 113 51.3
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 4.3e-18 95.1 139 47.5
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.1e-17 92.8 102 54.9
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 2.1e-17 92.8 123 44.7
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 6.2e-17 91.3 113 49.6
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.4e-16 90.1 113 49.6
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.4e-16 90.1 116 51.7
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.4e-16 90.1 127 48.0
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 9.0e-16 87.4 134 38.1
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.5e-15 86.7 118 47.5
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.6e-15 85.9 108 49.1
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.6e-15 85.9 108 49.1
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 4.5e-15 85.1 115 47.8
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 5.8e-15 84.7 104 46.2
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 7.6e-15 84.3 108 50.0
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 7.6e-15 84.3 108 50.0
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 9.9e-15 84.0 108 49.1
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 9.9e-15 84.0 104 49.0
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.7e-14 83.2 101 48.5
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.7e-14 83.2 112 46.4
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 3.8e-14 82.0 111 45.0
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 6.4e-14 81.3 115 45.2
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.4e-13 79.3 133 39.1
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 5.5e-13 78.2 118 39.0
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 7.1e-13 77.8 117 42.7
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 2.1e-12 76.3 126 40.5
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.8e-11 73.2 90 48.9
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 3.0e-11 72.4 103 47.6
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 6.7e-11 71.2 126 33.3
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 7.4e-10 67.8 127 37.8
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 1.8e-08 63.2 133 39.1
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 2.4e-08 62.8 130 32.3
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 4.0e-08 62.0 134 32.8
unitig_21.g20302 Utricularia gibba HOM05D005728 ORTHO05D005733 5.3e-08 61.6 121 36.4
Nitab4.5_0000196g0120 Nicotiana tabacum HOM05D005728 ORTHO05D005733 6.9e-08 61.2 133 30.8
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 2.6e-07 59.3 122 31.1
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 2.6e-07 59.3 136 34.6
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.3e-06 57.0 139 32.4
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.3e-06 57.0 139 32.4
Hma1.2p1_0434F.1_g152190 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.3e-06 57.0 51 62.7
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 3.8e-06 55.5 134 35.1
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 8.4e-06 54.3 149 33.6
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 8.4e-06 54.3 135 31.9


User provided reference genes

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