Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.1e-56 223.0 105 100.0
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 3.9e-43 177.9 93 89.2
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 9.1e-40 166.8 93 80.6
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 6.1e-36 154.1 93 79.6
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 2.3e-35 152.1 102 70.6
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 5.7e-34 147.5 104 67.3
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 7.0e-32 140.6 95 68.4
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 1.6e-31 139.4 93 68.8
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 1.3e-30 136.3 92 70.7
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.7e-30 136.0 92 68.5
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 2.9e-30 135.2 93 67.7
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 3.8e-30 134.8 90 71.1
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 8.5e-30 133.7 100 62.0
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 4.2e-29 131.3 88 71.6
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 4.2e-29 131.3 92 67.4
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 4.2e-29 131.3 92 67.4
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 5.5e-29 131.0 83 72.3
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 5.5e-29 131.0 92 66.3
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 2.1e-28 129.0 92 68.5
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.1e-28 129.0 88 67.0
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.1e-28 129.0 88 67.0
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.1e-28 129.0 88 67.0
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 2.7e-28 128.6 92 68.5
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 2.7e-28 128.6 89 67.4
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 4.7e-28 127.9 86 69.8
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 8.0e-28 127.1 91 64.8
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 1.0e-27 126.7 93 62.4
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 1.4e-27 126.3 101 60.4
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.4e-27 126.3 86 68.6
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 3.0e-27 125.2 92 65.2
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 8.8e-27 123.6 101 58.4
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 1.1e-26 123.2 102 56.9
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 1.5e-26 122.9 87 66.7
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 1.5e-26 122.9 86 62.8
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 3.3e-26 121.7 90 65.6
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 4.4e-26 121.3 82 67.1
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 4.4e-26 121.3 99 56.6
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 7.5e-26 120.6 103 58.3
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 2.8e-25 118.6 88 58.0
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 4.8e-25 117.9 85 64.7
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 4.8e-25 117.9 93 59.1
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 4.8e-25 117.9 87 64.4
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 6.3e-25 117.5 96 56.2
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 1.4e-24 116.3 88 59.1
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 1.8e-24 115.9 82 65.9
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 2.4e-24 115.5 85 65.9
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 3.1e-24 115.2 88 64.8
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 9.1e-24 113.6 88 56.8
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 9.1e-24 113.6 88 56.8
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 1.6e-23 112.8 74 70.3
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 2.0e-23 112.5 94 55.3
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 2.7e-23 112.1 88 58.0
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 3.5e-23 111.7 83 59.0
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 4.5e-23 111.3 83 62.7
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 5.9e-23 110.9 100 54.0
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.3e-22 109.8 77 67.5
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 2.2e-22 109.0 81 61.7
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 2.9e-22 108.6 83 59.0
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 3.8e-22 108.2 84 60.7
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 3.8e-22 108.2 85 58.8
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.1e-21 106.7 85 56.5
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.1e-21 106.7 85 56.5
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 1.9e-21 105.9 81 60.5
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 2.5e-21 105.5 85 57.6
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 4.2e-21 104.8 67 74.6
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 5.5e-21 104.4 84 56.0
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 5.5e-21 104.4 84 56.0
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 1.2e-20 103.2 99 47.5
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.6e-20 102.8 88 50.0
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 6.1e-20 100.9 83 57.8
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 1.4e-19 99.8 85 52.9
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.4e-19 99.8 85 52.9
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 5.2e-19 97.8 85 52.9
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 1.2e-18 96.7 83 55.4
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.5e-18 96.3 78 55.1
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.5e-18 96.3 78 55.1
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 3.4e-18 95.1 85 52.9
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 5.7e-18 94.4 87 51.7
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 7.5e-18 94.0 80 56.2
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 7.5e-18 94.0 78 53.8
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 9.8e-18 93.6 85 51.8
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 3.7e-17 91.7 73 56.2
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 4.8e-17 91.3 74 59.5
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 4.1e-16 88.2 73 54.8
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 5.4e-16 87.8 73 54.8
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 1.6e-15 86.3 84 52.4
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 1.0e-14 83.6 61 60.7
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 1.7e-14 82.8 69 62.3
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 6.5e-14 80.9 82 46.3
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 1.1e-13 80.1 72 50.0
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 1.5e-13 79.7 80 47.5
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 1.5e-13 79.7 80 47.5
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 2.5e-13 79.0 83 48.2
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 2.5e-13 79.0 72 51.4
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 1.6e-12 76.3 78 48.7
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 2.1e-12 75.9 83 48.2
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 2.7e-12 75.5 83 48.2
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 6.1e-12 74.3 81 48.1
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 1.8e-11 72.8 80 45.0
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.8e-11 72.8 80 45.0
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.8e-11 72.8 80 45.0
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.3e-11 72.4 73 52.1
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 4.0e-11 71.6 77 45.5
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 4.0e-11 71.6 82 46.3
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 8.8e-11 70.5 80 48.8
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.0e-10 69.3 73 52.1
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 2.0e-10 69.3 63 49.2
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 7.5e-10 67.4 73 52.1
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 4.5e-07 58.2 36 75.0
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 5.9e-07 57.8 72 40.3
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 2.3e-06 55.8 72 47.2


User provided reference genes

Program Settings