Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032451 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.9e-47 192.2 97 100.0
CSS0027054 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 9.6e-44 179.9 106 89.6
CSS0044668 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.2e-41 172.9 97 90.7
CSS0035774 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 7.1e-23 110.5 97 63.9
CSS0039126 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 7.1e-23 110.5 97 63.9
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 4.0e-18 94.7 97 62.9
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 7.1e-15 84.0 67 74.6
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 2.1e-14 82.4 101 51.5
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 1.0e-13 80.1 87 57.5
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 1.8e-13 79.3 97 55.7
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 1.9e-12 75.9 100 46.0
CSS0010589 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 7.4e-12 73.9 68 64.7
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 9.7e-12 73.6 107 43.9
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 4.8e-11 71.2 101 52.5
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 1.8e-10 69.3 98 48.0
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 1.8e-10 69.3 72 52.8
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 2.4e-10 68.9 91 47.3
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 2.4e-10 68.9 78 52.6
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 3.1e-10 68.6 54 63.0
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 3.1e-10 68.6 96 49.0
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 5.3e-10 67.8 102 47.1
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 6.9e-10 67.4 87 49.4
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 6.9e-10 67.4 69 55.1
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 6.9e-10 67.4 76 52.6
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 9.0e-10 67.0 113 41.6
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 9.0e-10 67.0 84 50.0
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 9.0e-10 67.0 102 50.0
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 9.0e-10 67.0 102 50.0
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 1.2e-09 66.6 93 45.2
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 1.5e-09 66.2 52 63.5
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 1.5e-09 66.2 55 60.0
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 1.5e-09 66.2 95 46.3
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 2.6e-09 65.5 109 41.3
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 3.4e-09 65.1 47 70.2
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 3.4e-09 65.1 112 43.8
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 4.5e-09 64.7 83 48.2
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 7.6e-09 63.9 102 46.1
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 7.6e-09 63.9 90 44.4
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 7.6e-09 63.9 84 45.2
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 1.0e-08 63.5 51 68.6
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 1.0e-08 63.5 116 41.4
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 1.0e-08 63.5 71 52.1
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 1.7e-08 62.8 70 52.9
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 2.2e-08 62.4 65 53.8
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 2.9e-08 62.0 54 57.4
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 2.9e-08 62.0 52 59.6
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 3.8e-08 61.6 42 73.8
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 5.0e-08 61.2 54 57.4
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 5.0e-08 61.2 54 57.4
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 6.5e-08 60.8 77 46.8
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 8.5e-08 60.5 102 45.1
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 1.1e-07 60.1 49 61.2
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 1.1e-07 60.1 49 61.2
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 1.4e-07 59.7 54 55.6
Potri.016G096900 Populus trichocarpa HOM05D007539 ORTHO05D009315 1.4e-07 59.7 98 44.9
PGR142G1614 Punica granatum HOM05D007539 ORTHO05D009315 1.4e-07 59.7 72 48.6
BcaB01g05814 Brassica carinata HOM05D007539 ORTHO05D009315 1.9e-07 59.3 94 44.7
FAN05G5748 Fragaria x ananassa HOM05D007539 ORTHO05D009315 1.9e-07 59.3 102 44.1
Sed0004549 Sechium edule HOM05D007539 ORTHO05D009315 1.9e-07 59.3 89 42.7
FAN02G2576 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.5e-07 58.9 102 44.1
Glyma.13G148000 Glycine max HOM05D007539 ORTHO05D009315 3.2e-07 58.5 49 59.2
Medtr1g062250 Medicago truncatula HOM05D007539 ORTHO05D009315 3.2e-07 58.5 94 43.6
Glyma.10G063500 Glycine max HOM05D007539 ORTHO05D009315 4.2e-07 58.2 52 57.7
Phvul.007G226000 Phaseolus vulgaris HOM05D007539 ORTHO05D009315 5.5e-07 57.8 74 45.9
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 5.5e-07 57.8 50 64.0
Aqoxy2G01556 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 1.2e-06 56.6 48 58.3
BcaB01g05802 Brassica carinata HOM05D007539 ORTHO05D009315 1.2e-06 56.6 102 41.2
C03p01600 Brassica napus HOM05D007539 ORTHO05D009315 1.2e-06 56.6 102 41.2
MBI11_g41953_MAGBIO Magnolia biondii HOM05D007539 ORTHO05D009315 1.2e-06 56.6 48 60.4
AUR62042699 Chenopodium quinoa HOM05D007539 ORTHO05D009315 1.6e-06 56.2 62 50.0
Lj5g0010413 Lotus japonicus HOM05D007539 ORTHO05D009315 1.6e-06 56.2 54 53.7
BolC3t12712H Brassica oleracea HOM05D007539 ORTHO05D009315 2.1e-06 55.8 84 50.0
CAN.G729.5 Capsicum annuum HOM05D007539 ORTHO05D009315 2.1e-06 55.8 47 57.4
Gohir.D04G106800 Gossypium hirsutum HOM05D007539 ORTHO05D009315 2.7e-06 55.5 49 59.2
GSVIVG01033714001 Vitis vinifera HOM05D007539 ORTHO05D009315 3.6e-06 55.1 48 62.5
Sabra16G0100100 Salix brachista HOM05D007539 ORTHO05D009315 4.6e-06 54.7 73 49.3
A03p01240 Brassica napus HOM05D007539 ORTHO05D009315 6.1e-06 54.3 100 39.0
ECA238G4618 Erigeron canadensis HOM05D007539 ORTHO05D009315 6.1e-06 54.3 46 56.5
VMungo0720G2140 Vigna mungo HOM05D007539 ORTHO05D009315 6.1e-06 54.3 72 45.8
unitig_8.g4721 Utricularia gibba HOM05D007539 ORTHO05D009315 7.9e-06 53.9 64 50.0


User provided reference genes

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