Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 2.1e-222 775.4 391 100.0
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 5.7e-188 661.0 387 86.6
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 3.7e-171 605.1 392 79.8
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 1.6e-166 589.7 387 78.8
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.6e-166 589.7 391 78.0
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.0e-165 587.0 392 78.1
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 5.2e-165 584.7 392 77.0
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 5.7e-164 581.3 372 80.6
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 5.7e-164 581.3 372 80.1
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.3e-163 580.1 388 77.6
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 3.2e-162 575.5 392 75.3
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 7.0e-162 574.3 395 74.7
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 1.2e-161 573.5 386 77.5
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 1.6e-161 573.2 383 76.5
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 5.9e-161 571.2 388 76.8
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 5.9e-161 571.2 394 75.4
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.3e-160 570.1 393 76.1
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.3e-160 570.1 371 77.9
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.7e-160 569.7 415 72.8
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 3.9e-160 568.5 394 75.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 5.0e-160 568.2 378 77.2
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.5e-159 566.6 385 74.0
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.9e-159 566.2 378 77.0
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.9e-159 566.2 395 73.4
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 3.3e-159 565.5 360 78.6
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 5.6e-159 564.7 360 78.3
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 7.3e-159 564.3 323 83.6
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 9.5e-159 563.9 385 74.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.2e-158 563.5 381 75.1
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.2e-158 563.5 349 80.8
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.2e-158 563.5 378 76.7
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 3.6e-158 562.0 395 73.4
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 4.7e-158 561.6 391 74.9
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 6.2e-158 561.2 318 85.2
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 3.1e-157 558.9 389 74.0
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.0e-157 558.5 391 72.9
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 5.2e-157 558.1 376 74.2
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.2e-156 557.0 391 73.1
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 2.0e-156 556.2 385 74.8
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.0e-156 556.2 392 73.0
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 2.6e-156 555.8 388 73.2
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 4.4e-156 555.1 323 83.9
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 4.4e-156 555.1 347 79.3
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 7.5e-156 554.3 326 81.9
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.8e-156 553.9 392 73.0
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.3e-155 553.5 398 72.6
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.9e-155 552.4 379 73.6
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 6.4e-155 551.2 320 83.4
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 1.1e-154 550.4 391 72.9
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.1e-154 550.4 347 78.4
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.1e-154 550.4 379 73.9
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 1.9e-154 549.7 347 78.7
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.4e-154 549.3 384 71.4
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.4e-154 549.3 372 75.3
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 3.2e-154 548.9 365 74.8
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 4.1e-154 548.5 338 79.6
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 5.4e-154 548.1 392 72.4
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 7.0e-154 547.7 344 78.5
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 7.0e-154 547.7 383 72.8
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 7.0e-154 547.7 386 71.5
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 9.2e-154 547.4 365 75.9
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.6e-153 546.6 361 77.3
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 2.0e-153 546.2 344 78.2
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 2.7e-153 545.8 344 78.2
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.7e-153 545.8 361 76.7
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 2.7e-153 545.8 396 71.5
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 3.5e-153 545.4 380 72.6
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 7.8e-153 544.3 335 78.5
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 1.0e-152 543.9 347 77.8
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.3e-152 543.5 329 82.4
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 8.6e-152 540.8 391 69.1
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.9e-151 539.7 381 73.0
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 1.9e-151 539.7 316 82.0
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 3.3e-151 538.9 347 77.2
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 7.3e-151 537.7 385 73.5
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.6e-150 536.6 387 69.8
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 8.9e-149 530.8 341 77.4
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 2.9e-147 525.8 318 80.8
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.4e-146 522.7 352 77.3
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 1.1e-143 513.8 393 69.0
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 4.3e-143 511.9 391 68.3
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 5.6e-143 511.5 388 66.0
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 8.9e-141 504.2 276 87.7
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 8.6e-136 487.6 391 67.0
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 7.3e-135 484.6 276 84.1
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 9.6e-135 484.2 268 86.9
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.6e-134 483.4 337 75.4
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 2.7e-129 466.1 259 88.8
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.7e-128 463.4 267 82.8
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 3.3e-127 459.1 383 65.3
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 2.4e-122 443.0 315 66.7
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 6.0e-121 438.3 320 66.9
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 8.7e-120 434.5 268 76.9
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.5e-119 433.7 318 72.3
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 1.2e-116 424.1 328 63.1
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 4.9e-115 418.7 318 63.2
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 4.0e-109 399.1 267 74.5
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 2.6e-108 396.4 270 74.1
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 1.7e-107 393.7 298 70.1
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 1.1e-106 391.0 294 69.0
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.0e-104 384.4 291 72.5
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 1.3e-94 350.9 254 70.5
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 5.7e-87 325.5 269 68.4
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 2.2e-78 297.0 338 51.5
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.2e-73 281.2 245 63.3
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 4.7e-73 279.3 316 43.4
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 4.7e-73 279.3 316 43.4
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 8.8e-72 275.0 311 46.3
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 4.4e-71 272.7 165 80.6
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 5.7e-71 272.3 154 87.0
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 1.8e-69 267.3 336 43.2
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.3e-64 250.4 166 77.7
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 7.0e-61 238.8 130 87.7
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.1e-37 161.8 91 84.6
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 1.3e-35 154.8 399 31.3
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-35 154.1 100 71.0
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 5.2e-32 142.9 85 80.0
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 7.5e-31 139.0 79 83.5
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 8.3e-30 135.6 90 73.3
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 6.8e-24 115.9 105 60.0
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 2.2e-22 110.9 78 67.9
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 1.3e-19 101.7 114 55.3
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 8.1e-17 92.4 75 62.7
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 1.1e-16 92.0 58 75.9
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.4e-15 86.7 54 75.9
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 1.7e-14 84.7 57 80.7
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 2.2e-14 84.3 47 85.1
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 4.9e-14 83.2 53 71.7
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 4.9e-14 83.2 53 71.7
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 6.4e-14 82.8 111 49.5
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 8.4e-14 82.4 95 51.6
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 1.4e-13 81.6 109 49.5
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.0e-11 75.5 291 27.8
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 2.3e-11 74.3 75 54.7
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 3.9e-11 73.6 85 49.4
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 6.6e-11 72.8 57 66.7
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 1.3e-09 68.6 315 24.8
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.1e-09 67.8 286 26.9
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 6.2e-09 66.2 80 47.5
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 2.4e-08 64.3 330 26.4
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 3.1e-08 63.9 280 27.1
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 4.0e-08 63.5 42 76.2
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.5e-07 61.6 276 25.7
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 2.0e-07 61.2 305 24.9
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 3.4e-07 60.5 295 26.4
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 4.5e-07 60.1 280 26.1
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 4.5e-07 60.1 285 26.7
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 7.6e-07 59.3 288 25.0
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 9.9e-07 58.9 300 26.3
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 9.9e-07 58.9 282 25.9
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.3e-06 58.5 280 26.1
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 1.3e-06 58.5 280 24.3
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.7e-06 58.2 289 25.6
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.7e-06 58.2 294 24.8
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 1.7e-06 58.2 293 25.3
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.2e-06 57.8 315 24.4
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 2.9e-06 57.4 278 26.3
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 2.9e-06 57.4 316 25.0
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 3.8e-06 57.0 278 27.3


User provided reference genes

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