Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.2e-121 439.9 227 100.0
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.7e-120 436.0 227 99.1
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.1e-112 407.9 228 92.5
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.5e-111 406.4 227 90.7
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.6e-110 402.9 227 89.4
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 3.6e-110 401.7 227 90.7
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.1e-109 398.7 227 89.9
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.0e-108 396.0 227 89.0
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 2.0e-108 396.0 227 89.4
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.6e-108 395.6 227 89.0
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.4e-108 394.8 227 89.0
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 5.8e-108 394.4 227 89.0
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.7e-107 392.9 214 92.5
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.9e-107 392.1 227 88.1
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 86.3
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 89.0
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 3.7e-107 391.7 227 87.7
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 4.9e-107 391.3 227 88.1
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 4.9e-107 391.3 227 89.0
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.9e-106 389.4 227 88.1
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 5.4e-106 387.9 228 88.2
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 5.4e-106 387.9 226 86.3
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.2e-105 386.7 227 86.8
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.6e-105 386.3 227 87.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.1e-105 386.0 218 91.7
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 85.0
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.7e-105 385.6 227 86.8
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 86.3
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 85.5
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 6.0e-105 384.4 228 87.3
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 85.9
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.0e-104 382.1 227 84.1
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 85.9
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 6.6e-104 380.9 227 84.1
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 84.6
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.5e-103 379.8 227 85.5
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.5e-103 379.8 227 83.7
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 85.5
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.9e-103 379.4 226 86.3
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.5e-103 379.0 229 86.5
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 85.0
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 3.3e-103 378.6 227 83.7
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 3.3e-103 378.6 229 86.0
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 3.3e-103 378.6 224 87.1
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 3.3e-103 378.6 226 84.5
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 85.0
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 7.3e-103 377.5 228 85.5
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 7.3e-103 377.5 228 85.5
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 9.6e-103 377.1 226 84.5
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 9.6e-103 377.1 228 85.1
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 83.7
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 83.7
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.2e-102 376.7 219 86.3
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.6e-102 376.3 226 85.0
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.6e-102 376.3 229 86.5
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.1e-102 375.9 226 84.5
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 2.8e-102 375.6 217 87.1
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 83.3
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 84.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 4.7e-102 374.8 228 84.2
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 8.1e-102 374.0 227 82.8
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 8.1e-102 374.0 229 83.4
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 82.8
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 83.7
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.8e-101 372.9 226 83.6
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.8e-101 372.9 227 83.3
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 228 83.3
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 229 83.0
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.1e-101 372.1 221 85.5
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.2e-101 371.3 229 83.4
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 8.9e-101 370.5 227 81.9
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 81.9
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 82.8
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.1
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 81.1
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 81.9
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 3.4e-100 368.6 227 82.8
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 5.8e-100 367.9 233 83.3
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 84.6
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.3e-99 366.7 215 86.5
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 4.9e-99 364.8 228 82.9
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 4.9e-99 364.8 214 86.9
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 6.4e-99 364.4 217 83.4
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.4e-98 363.2 217 83.9
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.4e-98 362.5 227 81.5
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 3.2e-98 362.1 207 87.9
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 4.2e-98 361.7 227 81.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 7.1e-98 360.9 218 83.5
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 81.5
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 9.3e-98 360.5 215 84.2
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.6e-97 359.8 214 86.0
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 2.1e-97 359.4 217 83.4
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.5e-97 358.6 214 82.2
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 6.0e-97 357.8 228 80.3
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 7.8e-97 357.5 225 83.1
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.8e-97 357.5 214 84.6
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 1.0e-96 357.1 225 80.0
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 5.1e-96 354.8 214 82.2
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.1e-95 353.6 208 86.1
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 2.5e-95 352.4 206 85.9
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.5e-95 352.4 227 78.0
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.3e-95 351.7 206 85.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.6e-95 351.3 205 85.9
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 9.6e-95 350.5 214 83.2
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.1e-94 349.4 265 70.2
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 2.8e-94 349.0 214 83.6
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 4.8e-94 348.2 213 81.7
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 6.2e-94 347.8 215 80.9
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 5.3e-93 344.7 227 79.3
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 5.3e-93 344.7 214 79.0
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.3e-91 340.1 227 77.5
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 6.4e-91 337.8 210 84.8
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 4.3e-87 325.1 195 83.6
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.3e-86 323.6 228 72.8
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.6e-86 323.2 190 84.7
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.3e-83 313.5 212 74.1
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.7e-83 313.2 227 73.1
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.7e-83 313.2 191 81.7
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.4e-79 297.7 195 77.4
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 3.7e-78 295.4 181 85.1
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.2e-76 290.4 214 70.1
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.5e-76 290.0 229 71.2
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 6.5e-75 284.6 164 88.4
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 4.6e-73 278.5 227 68.7
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 8.7e-72 274.2 216 66.2
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.5e-71 273.5 222 65.8
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.5e-71 272.7 164 82.3
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 3.7e-70 268.9 193 73.6
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.5e-68 261.9 160 80.0
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.0e-67 260.8 197 74.1
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 2.1e-65 253.1 209 63.6
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.3e-64 250.4 150 83.3
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.3e-64 249.6 153 81.0
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.1e-61 240.7 155 80.6
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 3.8e-59 232.3 237 52.7
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 3.7e-54 215.7 215 54.0
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 2.0e-52 209.9 194 61.3
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 4.2e-50 202.2 131 75.6
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.1e-42 177.6 124 71.0
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.2e-42 174.9 115 78.3
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 5.2e-40 168.7 108 80.6
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.4e-32 144.1 109 71.6
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.8e-32 141.4 87 82.8
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 2.0e-28 130.2 92 69.6
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.0e-27 127.9 135 56.3
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.2e-26 122.9 113 64.6
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 5.0e-19 99.0 63 74.6
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.5e-18 94.7 51 90.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.3e-16 90.1 97 53.6
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-13 81.3 68 60.3
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.1e-13 79.3 60 71.7
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 5.0e-11 72.4 208 28.8
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 6.6e-11 72.0 114 43.0
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 8.9e-08 61.6 63 57.1


User provided reference genes

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