Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.1e-133 479.9 242 100.0
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.1e-116 422.5 251 87.3
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.1e-116 422.5 251 87.3
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.9e-104 382.9 251 78.9
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 2.4e-104 382.5 251 78.9
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.6e-103 378.3 251 78.5
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 4.6e-103 378.3 251 78.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.3e-102 376.7 251 76.1
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.7e-102 376.3 251 77.3
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 3.0e-102 375.6 251 76.1
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.0e-102 375.6 251 76.5
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 8.6e-102 374.0 251 76.5
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.5e-101 373.2 251 76.1
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.5e-101 373.2 251 76.9
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.9e-101 372.9 251 75.7
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 2.5e-101 372.5 251 74.5
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.7e-100 368.2 251 75.3
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.1e-99 367.1 251 74.9
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.4e-99 366.7 251 73.7
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.8e-99 366.3 251 75.3
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 1.8e-99 366.3 251 74.5
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 1.8e-99 366.3 251 74.5
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 2.3e-99 365.9 251 75.3
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 3.1e-99 365.5 251 74.1
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 4.0e-99 365.2 251 74.9
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.0e-99 365.2 251 74.1
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 4.0e-99 365.2 251 73.3
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 5.2e-99 364.8 251 74.1
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 5.2e-99 364.8 251 74.1
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 6.8e-99 364.4 251 74.1
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 6.8e-99 364.4 251 73.7
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 6.8e-99 364.4 251 73.3
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 1.2e-98 363.6 251 74.1
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.2e-98 363.6 251 73.3
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.2e-98 363.6 251 73.7
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.5e-98 363.2 251 72.9
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.5e-98 363.2 251 72.5
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.6e-98 362.5 251 72.5
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 2.6e-98 362.5 251 72.5
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 4.4e-98 361.7 251 73.3
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 5.8e-98 361.3 251 74.1
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 7.6e-98 360.9 251 73.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.3e-97 360.1 251 73.7
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.7e-97 359.8 251 73.3
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.7e-97 359.8 251 73.3
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 2.2e-97 359.4 251 71.3
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 2.2e-97 359.4 251 71.7
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 4.9e-97 358.2 251 71.7
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 6.4e-97 357.8 251 72.9
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 6.4e-97 357.8 251 72.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.1e-96 357.1 251 73.3
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.4e-96 355.9 251 72.9
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 4.1e-96 355.1 251 71.3
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 4.1e-96 355.1 251 72.5
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 4.1e-96 355.1 251 71.7
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 5.4e-96 354.8 251 72.9
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 5.4e-96 354.8 251 70.9
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.1e-96 354.4 252 72.2
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 7.1e-96 354.4 251 71.7
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 7.1e-96 354.4 251 70.9
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 9.2e-96 354.0 251 70.5
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.2e-95 353.6 251 71.3
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.6e-95 353.2 252 71.4
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 2.1e-95 352.8 251 71.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 2.1e-95 352.8 251 70.5
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 2.1e-95 352.8 251 70.9
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.7e-95 352.4 252 71.0
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 2.7e-95 352.4 252 71.0
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.7e-95 352.4 252 71.8
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 2.7e-95 352.4 251 72.1
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 3.5e-95 352.1 252 71.4
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 4.6e-95 351.7 252 71.0
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 4.6e-95 351.7 252 71.0
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 7.8e-95 350.9 252 70.6
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.0e-94 350.5 252 71.0
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.0e-94 350.5 252 70.6
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 2.3e-94 349.4 252 71.0
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.3e-94 349.4 251 71.3
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 3.0e-94 349.0 283 66.1
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.0e-94 349.0 251 68.9
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 3.9e-94 348.6 252 70.2
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 3.9e-94 348.6 251 70.1
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.6e-94 347.8 249 70.3
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 8.6e-94 347.4 252 69.8
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.3e-93 345.5 244 73.0
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.8e-92 342.4 251 69.7
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 4.7e-92 341.7 281 63.3
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 5.2e-91 338.2 242 70.7
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 5.2e-91 338.2 251 68.1
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 6.8e-91 337.8 251 68.5
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 8.9e-91 337.4 251 68.1
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.3e-89 333.6 251 66.5
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.7e-89 333.2 285 63.5
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.6e-87 326.6 250 65.6
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 4.6e-87 325.1 251 68.5
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 7.8e-87 324.3 252 62.7
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.7e-86 323.2 362 52.2
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 2.3e-86 322.8 252 62.7
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 4.3e-85 318.5 251 66.9
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 9.6e-85 317.4 251 61.8
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.3e-84 317.0 251 61.8
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 3.1e-83 312.4 221 71.0
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 7.6e-82 307.8 237 67.5
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 4.6e-79 298.5 239 65.7
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.3e-78 297.0 201 76.6
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 3.9e-78 295.4 201 77.1
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.5e-77 293.5 252 59.9
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 4.3e-77 292.0 224 67.4
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 7.3e-77 291.2 252 57.1
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 5.3e-75 285.0 221 67.0
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 4.5e-74 282.0 186 79.0
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.9e-72 276.6 252 58.3
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 4.0e-67 258.8 168 77.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 5.3e-67 258.5 200 68.0
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 5.3e-67 258.5 270 51.9
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 3.8e-65 252.3 207 65.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 2.7e-63 246.1 252 50.0
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 6.0e-63 245.0 251 53.0
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 2.3e-62 243.0 251 53.4
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 8.7e-62 241.1 251 53.0
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.6e-60 236.9 164 72.0
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 3.7e-60 235.7 159 71.7
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 6.1e-55 218.4 259 42.9
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 7.9e-55 218.0 145 77.9
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 8.7e-54 214.5 251 48.2
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 2.9e-49 199.5 251 45.0
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 7.4e-45 184.9 133 66.9
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 5.0e-41 172.2 172 58.1
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.5e-40 169.9 181 53.0
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 3.3e-37 159.5 236 42.4
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.9e-33 146.4 236 45.3
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.4e-30 137.5 236 39.8
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 5.2e-30 135.6 158 53.2
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.4e-27 127.5 134 50.7
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 1.3e-25 120.9 116 55.2
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 1.1e-24 117.9 116 54.3
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 9.4e-24 114.8 70 78.6
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 8.0e-23 111.7 92 63.0
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 3.0e-22 109.8 174 42.5
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 4.1e-19 99.4 57 77.2
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 5.0e-17 92.4 228 32.5
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 1.9e-16 90.5 236 31.8
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.5e-16 90.1 73 64.4
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 5.7e-13 79.0 228 30.3
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 4.9e-12 75.9 47 74.5
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 9.2e-11 71.6 68 58.8
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 1.1e-08 64.7 49 63.3
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 2.8e-07 60.1 57 52.6


User provided reference genes

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