Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.6e-42 175.6 85 100.0
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.9e-41 171.0 82 100.0
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 2.1e-26 122.1 73 75.3
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 4.6e-26 120.9 55 98.2
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 1.0e-25 119.8 64 81.2
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.3e-25 119.4 70 80.0
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.1e-24 116.3 73 75.3
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.5e-24 115.9 59 83.1
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.5e-24 115.9 61 80.3
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.5e-24 115.9 74 71.6
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.9e-24 115.5 55 90.9
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 2.5e-24 115.2 63 79.4
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 3.3e-24 114.8 70 72.9
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 7.4e-24 113.6 83 66.3
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 1.6e-23 112.5 79 68.4
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 2.1e-23 112.1 58 82.8
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 4.8e-23 110.9 58 84.5
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 8.2e-23 110.2 56 82.1
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 8.2e-23 110.2 65 73.8
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 1.4e-22 109.4 71 69.0
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 1.4e-22 109.4 74 71.6
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.4e-22 109.4 55 83.6
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 1.4e-22 109.4 82 65.9
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 3.1e-22 108.2 88 61.4
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 3.1e-22 108.2 83 63.9
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 4.0e-22 107.8 74 70.3
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 5.3e-22 107.5 72 69.4
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 5.3e-22 107.5 73 67.1
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 6.9e-22 107.1 53 86.8
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 6.9e-22 107.1 83 65.1
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 6.9e-22 107.1 70 70.0
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.2e-21 106.3 54 83.3
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 4.5e-21 104.4 72 68.1
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 4.5e-21 104.4 56 82.1
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 5.8e-21 104.0 62 71.0
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 7.6e-21 103.6 96 58.3
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 7.6e-21 103.6 76 63.2
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.0e-20 103.2 71 64.8
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 1.0e-20 103.2 58 74.1
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.3e-20 102.8 77 63.6
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.3e-20 102.8 72 68.1
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 1.3e-20 102.8 74 63.5
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 1.7e-20 102.4 71 64.8
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.7e-20 102.4 60 73.3
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 1.7e-20 102.4 65 66.2
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.7e-20 102.4 70 68.6
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.7e-20 102.4 73 67.1
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 2.2e-20 102.1 58 75.9
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 2.2e-20 102.1 71 66.2
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 2.2e-20 102.1 60 75.0
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 2.2e-20 102.1 57 73.7
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 2.9e-20 101.7 71 64.8
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 2.9e-20 101.7 63 71.4
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.9e-20 100.9 54 77.8
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 6.5e-20 100.5 79 58.2
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 6.5e-20 100.5 71 63.4
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 6.5e-20 100.5 66 69.7
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 8.4e-20 100.1 64 65.6
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 8.4e-20 100.1 59 72.9
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 8.4e-20 100.1 64 68.8
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 8.4e-20 100.1 67 64.2
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 8.4e-20 100.1 62 69.4
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 1.4e-19 99.4 71 64.8
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.4e-19 99.4 57 70.2
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.9e-19 99.0 55 72.7
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.9e-19 99.0 78 67.9
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 2.5e-19 98.6 77 62.3
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 3.2e-19 98.2 55 70.9
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 3.2e-19 98.2 55 70.9
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 3.2e-19 98.2 78 59.0
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 3.2e-19 98.2 54 74.1
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 9.3e-19 96.7 54 72.2
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 1.2e-18 96.3 57 71.9
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.6e-18 95.9 54 72.2
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.6e-18 95.9 54 75.9
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.6e-18 95.9 78 57.7
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 2.1e-18 95.5 49 77.6
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 2.1e-18 95.5 49 77.6
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 2.7e-18 95.1 49 77.6
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 2.7e-18 95.1 49 77.6
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 2.7e-18 95.1 49 77.6
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 2.7e-18 95.1 49 77.6
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 2.7e-18 95.1 79 58.2
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 3.5e-18 94.7 55 72.7
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.6e-18 94.4 53 75.5
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 7.9e-18 93.6 84 57.1
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 7.9e-18 93.6 67 58.2
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.3e-17 92.8 55 72.7
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.3e-17 92.8 51 68.6
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.8e-17 92.4 53 73.6
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 2.3e-17 92.0 49 75.5
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 3.0e-17 91.7 59 59.3
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 3.9e-17 91.3 76 53.9
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.1e-16 89.7 53 71.7
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 1.5e-16 89.4 63 60.3
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.9e-16 89.0 71 59.2
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 4.3e-16 87.8 76 55.3
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 5.7e-16 87.4 67 58.2
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 9.7e-16 86.7 63 60.3
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 2.2e-15 85.5 38 97.4
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 4.8e-15 84.3 64 56.2
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 4.8e-15 84.3 42 83.3
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 4.8e-15 84.3 56 64.3
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.1e-14 83.2 78 50.0
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.4e-14 82.8 76 53.9
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 5.3e-14 80.9 55 50.9
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 6.9e-14 80.5 52 67.3
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 3.4e-13 78.2 126 36.5
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 5.9e-13 77.4 49 63.3
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 5.9e-13 77.4 49 63.3
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 7.7e-13 77.0 65 55.4
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 1.3e-12 76.3 49 59.2
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.9e-12 75.1 38 81.6
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 5.0e-12 74.3 63 57.1
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 1.4e-11 72.8 39 84.6
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 2.5e-11 72.0 39 71.8
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.5e-11 72.0 38 76.3
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 4.2e-11 71.2 41 78.0
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 4.2e-11 71.2 82 42.7
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 3.6e-10 68.2 56 48.2
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 4.6e-10 67.8 32 87.5
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 4.6e-10 67.8 65 56.9
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.8e-09 65.9 79 48.1
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-09 65.5 38 68.4
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-09 65.5 38 68.4
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-09 65.5 38 68.4
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-09 65.5 38 68.4
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-09 65.5 38 68.4
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 5.1e-09 64.3 40 70.0
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 8.8e-09 63.5 38 71.1
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.9e-08 62.4 38 63.2
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 3.7e-07 58.2 33 75.8
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.8e-06 55.8 32 65.6
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.1e-06 55.1 30 70.0
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 5.3e-06 54.3 28 75.0


User provided reference genes

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