Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.8e-173 610.5 301 100.0
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 4.9e-171 604.4 298 99.7
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 7.6e-124 447.6 298 72.8
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.2e-123 446.0 298 75.2
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 4.2e-122 441.8 280 79.6
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 7.1e-122 441.0 310 73.9
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 3.0e-120 435.6 298 69.1
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.8e-117 426.4 298 69.5
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 4.1e-117 425.2 300 70.0
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.2e-116 423.7 298 69.8
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 5.9e-116 421.4 283 71.4
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 7.6e-116 421.0 302 69.5
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 1.7e-115 419.9 298 70.1
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 3.8e-115 418.7 298 69.5
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.1e-114 417.2 298 66.8
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 1.4e-114 416.8 298 68.5
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.9e-114 416.4 276 72.8
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 3.2e-114 415.6 298 66.4
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 7.2e-114 414.5 302 68.9
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 9.3e-114 414.1 298 69.8
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 9.3e-114 414.1 299 69.9
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 9.3e-114 414.1 298 69.8
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 6.1e-113 411.4 298 67.4
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.4e-112 410.2 298 66.4
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.8e-112 409.8 303 66.7
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 8.8e-112 407.5 298 67.4
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.1e-111 407.1 298 68.1
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 2.5e-111 406.0 302 66.2
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 5.7e-111 404.8 299 69.9
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.7e-110 403.3 299 66.2
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 6.9e-109 397.9 276 70.7
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.5e-108 396.7 229 78.6
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 3.4e-108 395.6 298 64.8
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 1.3e-107 393.7 298 66.8
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.3e-107 393.7 298 68.1
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 8.5e-107 391.0 254 72.0
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.4e-106 390.2 298 66.8
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.9e-106 389.8 306 63.4
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.9e-106 389.8 214 83.6
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 2.5e-106 389.4 297 65.3
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.2e-105 387.1 272 69.1
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.6e-105 386.7 299 65.9
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.6e-105 386.7 299 65.6
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.7e-105 386.0 300 63.3
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 4.7e-105 385.2 298 64.1
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 4.7e-105 385.2 298 64.1
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 4.7e-105 385.2 245 72.2
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 6.1e-105 384.8 245 72.7
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.0e-104 384.0 298 65.1
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.4e-104 383.6 305 62.6
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.0e-104 382.5 234 75.2
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 3.9e-104 382.1 298 63.8
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 5.1e-104 381.7 245 72.7
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 6.7e-104 381.3 213 81.2
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 6.7e-104 381.3 213 81.2
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 8.8e-104 380.9 302 63.2
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 8.8e-104 380.9 295 65.8
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 2.6e-103 379.4 234 73.9
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 7.4e-103 377.9 233 74.7
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.3e-102 377.1 298 62.8
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 4.8e-102 375.2 298 63.1
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-101 374.0 315 61.0
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-101 374.0 315 61.0
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.1e-101 374.0 298 63.4
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.4e-101 373.6 298 63.1
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 1.4e-101 373.6 327 58.4
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.8e-101 373.2 298 62.1
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 4.1e-101 372.1 300 63.7
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.2e-99 366.3 213 78.9
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 2.2e-99 366.3 298 61.1
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 8.5e-99 364.4 213 79.8
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.4e-98 363.6 298 61.1
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 9.4e-98 360.9 247 70.4
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 8.0e-97 357.8 231 70.1
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 3.9e-96 355.5 260 64.2
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 6.7e-96 354.8 231 70.6
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 6.3e-94 348.2 293 59.0
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.5e-92 342.0 301 61.5
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 7.7e-92 341.3 228 68.4
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 7.7e-92 341.3 280 62.5
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 2.2e-91 339.7 261 63.6
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 5.0e-91 338.6 231 69.3
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 8.5e-91 337.8 231 68.8
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 7.2e-90 334.7 301 59.1
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 1.2e-87 327.4 301 57.5
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.3e-86 323.9 220 66.8
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 3.7e-86 322.4 226 67.3
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.8e-85 320.1 293 56.7
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 3.1e-85 319.3 229 63.8
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.4e-79 299.3 300 56.7
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.7e-78 297.0 263 57.0
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 8.3e-78 294.7 257 58.4
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 7.0e-77 291.6 193 70.5
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.3e-75 287.3 235 59.1
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 6.6e-75 285.0 320 50.6
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 9.5e-74 281.2 233 61.8
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 2.3e-72 276.6 260 53.1
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 3.1e-69 266.2 218 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.3e-67 260.0 227 57.3
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.1e-66 257.7 151 76.8
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.5e-66 257.3 172 65.7
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 3.6e-65 252.7 177 69.5
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.2e-55 221.1 173 61.3
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 3.1e-48 196.4 174 62.6
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 4.4e-47 192.6 249 41.4
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 5.6e-42 175.6 199 47.7
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 1.2e-39 167.9 154 54.5
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 5.8e-39 165.6 227 41.0
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 5.8e-39 165.6 198 48.5
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 1.8e-32 144.1 107 58.9
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.3e-32 142.5 103 65.0
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.4e-29 132.5 98 63.3
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.3e-25 121.3 119 52.1
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.6e-25 120.9 119 52.1
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 3.6e-25 119.8 144 45.1
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 4.0e-24 116.3 152 42.1
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.2e-23 114.8 104 54.8
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.4e-21 107.8 63 76.2
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 3.2e-21 106.7 75 69.3
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 3.9e-19 99.8 137 38.7
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 3.9e-19 99.8 143 39.9
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.6e-15 85.5 40 97.5
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 6.7e-11 72.4 189 29.1
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 6.7e-11 72.4 94 42.6
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 2.1e-09 67.4 159 36.5
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 3.7e-09 66.6 121 31.4
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 6.2e-09 65.9 61 49.2
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 2.4e-08 63.9 50 62.0
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 4.0e-08 63.2 117 33.3
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 2.0e-07 60.8 103 35.9
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 2.0e-07 60.8 52 50.0
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 5.8e-07 59.3 50 58.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 7.6e-07 58.9 49 55.1
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 7.6e-07 58.9 50 58.0
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 1.0e-06 58.5 50 56.0
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 8.4e-06 55.5 40 55.0


User provided reference genes

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