Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.8e-123 446.4 747 100.0
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.8e-123 446.4 747 100.0
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.5e-78 298.1 740 59.5
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-77 295.0 151 98.7
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 2.9e-74 284.6 741 84.6
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 3.8e-74 284.3 739 88.2
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-73 282.3 740 79.2
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.5e-73 280.4 740 84.2
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.5e-70 272.3 728 84.8
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 6.9e-68 263.5 725 86.3
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.3e-66 259.2 741 82.5
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-64 252.3 148 87.2
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.6e-64 252.3 741 86.0
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.0e-63 248.1 130 94.6
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 3.3e-62 244.6 152 79.6
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.7e-62 243.0 151 85.4
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.3e-61 242.7 742 81.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 2.8e-61 241.5 742 81.7
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.8e-60 238.8 152 75.0
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.4e-60 238.4 741 81.1
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 3.1e-60 238.0 152 77.0
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 4.1e-60 237.7 152 77.0
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 5.3e-60 237.3 152 76.3
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 5.3e-60 237.3 158 74.7
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 6.9e-60 236.9 152 75.7
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 9.1e-60 236.5 151 78.1
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 9.1e-60 236.5 149 79.2
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 9.1e-60 236.5 742 81.4
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 1.5e-59 235.7 151 78.8
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 2.0e-59 235.3 155 76.1
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 2.6e-59 235.0 149 79.2
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.6e-59 235.0 152 75.0
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.3e-58 232.6 152 72.4
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 2.2e-58 231.9 152 75.7
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.2e-58 231.9 151 77.5
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 3.8e-58 231.1 157 73.2
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 3.8e-58 231.1 742 70.4
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 5.0e-58 230.7 152 73.0
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 5.0e-58 230.7 151 74.2
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 6.5e-58 230.3 152 72.4
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.1e-57 229.6 152 73.0
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.1e-57 229.6 151 73.5
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.9e-57 228.8 152 71.7
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 4.2e-57 227.6 151 74.8
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 7.2e-57 226.9 151 74.8
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 2.1e-56 225.3 151 75.5
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 2.7e-56 224.9 741 81.9
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 2.7e-56 224.9 152 71.7
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 4.6e-56 224.2 147 72.1
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.1e-56 223.8 149 72.5
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 2.3e-55 221.9 149 71.8
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 5.1e-55 220.7 144 75.0
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.5e-54 219.2 151 71.5
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 5.7e-54 217.2 149 70.5
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 5.7e-54 217.2 152 69.7
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 7.4e-54 216.9 144 72.2
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 9.7e-54 216.5 152 69.1
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-53 215.3 151 70.2
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.8e-53 214.9 151 68.9
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 3.7e-53 214.5 149 70.5
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.8e-53 214.2 133 85.0
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 4.8e-53 214.2 158 67.1
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 8.2e-53 213.4 149 68.5
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 3.1e-52 211.5 151 68.9
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 9.1e-52 209.9 151 68.2
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 2.6e-51 208.4 154 68.8
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 7.7e-51 206.8 152 68.4
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 2.2e-50 205.3 148 67.6
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 3.8e-50 204.5 158 63.3
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 5.0e-50 204.1 158 64.6
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 5.0e-50 204.1 150 68.7
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.4e-49 202.6 712 82.3
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.9e-49 202.2 158 65.8
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 9.4e-49 199.9 130 71.5
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.6e-48 199.1 741 80.2
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 3.6e-48 198.0 158 62.7
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.4e-47 196.1 150 64.7
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.8e-47 195.7 127 72.4
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.8e-47 195.7 149 63.1
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 1.8e-47 195.7 152 62.5
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 5.2e-47 194.1 740 81.1
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 8.8e-47 193.4 130 70.8
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.1e-46 193.0 158 60.1
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 3.3e-46 191.4 120 80.0
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 7.4e-46 190.3 712 82.2
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-45 189.5 151 71.5
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 6.1e-40 170.6 113 72.6
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.0e-39 169.9 110 74.5
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.4e-39 169.5 130 63.8
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.4e-39 169.5 169 49.7
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 4.0e-39 167.9 128 62.5
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 4.0e-39 167.9 158 54.4
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 4.0e-39 167.9 110 76.4
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.2e-38 166.4 107 75.7
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.0e-38 165.6 125 64.0
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.0e-38 165.6 125 64.0
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 4.4e-38 164.5 128 62.5
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 1.7e-37 162.5 119 67.2
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.8e-37 161.8 172 61.6
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 6.3e-37 160.6 118 66.1
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 1.8e-36 159.1 125 63.2
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.4e-36 158.7 119 66.4
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.2e-35 156.4 115 65.2
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.6e-35 156.0 102 71.6
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 7.7e-35 153.7 106 72.6
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.7e-34 152.5 116 65.5
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.7e-34 152.5 116 63.8
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 9.4e-33 146.7 155 45.2
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 4.7e-32 144.4 108 66.7
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 4.0e-31 141.4 116 62.9
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 6.8e-31 140.6 119 58.8
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 8.8e-31 140.2 119 58.0
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 1.2e-30 139.8 119 59.7
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.0e-30 139.0 155 45.8
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 7.5e-30 137.1 116 57.8
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 3.7e-29 134.8 121 53.7
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 7.0e-28 130.6 150 43.3
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.2e-27 129.8 114 55.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.6e-27 129.4 159 41.5
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 2.0e-27 129.0 150 45.3
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 6.5e-26 124.0 150 43.3
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.1e-25 123.2 173 38.2
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.1e-24 119.0 151 45.7
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 6.8e-23 114.0 173 46.8
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 4.4e-22 111.3 91 63.7
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 7.5e-22 110.5 81 67.9
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.9e-18 98.6 116 45.7
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 1.5e-09 69.7 41 85.4
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.9e-09 69.3 143 30.1
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 4.3e-09 68.2 55 61.8
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 4.0e-07 61.6 108 30.6
Sopen03g035440 Solanum pennellii HOM05D000424 ORTHO05D000355 2.0e-06 59.3 82 39.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.4e-06 58.2 82 32.9
TWI75G0869 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 4.4e-06 58.2 82 39.0
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 7.5e-06 57.4 108 30.6
TWI75G1540 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 9.8e-06 57.0 82 37.8


User provided reference genes

Program Settings