Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032371 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 1.3e-41 172.6 84 100.0
vmacro19447 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 4.6e-10 67.8 41 78.0
vmacro23386 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 2.3e-09 65.5 32 93.8
Hma1.2p1_0584F.1_g183350 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 3.0e-09 65.1 35 82.9
CSS0038117 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 3.9e-09 64.7 35 82.9
Cfa004963 Carpinus fangiana HOM05D007602 ORTHO05D009086 1.5e-08 62.8 35 80.0
Haze_02438 Corylus avellana HOM05D007602 ORTHO05D009086 1.5e-08 62.8 35 80.0
Hma1.2p1_1353F.1_g277670 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 3.3e-08 61.6 35 77.1
Hma1.2p1_2724F.1_g327525 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 3.3e-08 61.6 35 77.1
Lj5E203T0 Lonicera japonica HOM05D007602 ORTHO05D009086 3.3e-08 61.6 35 77.1
ClCG09G017780 Citrullus lanatus HOM05D007602 ORTHO05D009086 4.3e-08 61.2 35 77.1
Manes.15G146500 Manihot esculenta HOM05D007602 ORTHO05D009086 7.3e-08 60.5 35 74.3
CANSAT25G1814 Cannabis sativa HOM05D007602 ORTHO05D009086 9.6e-08 60.1 35 74.3
Carub.0001s3861 Capsella rubella HOM05D007602 ORTHO05D009086 9.6e-08 60.1 34 76.5
MELO3C021943.2 Cucumis melo HOM05D007602 ORTHO05D009086 1.2e-07 59.7 35 74.3
CsaV3_2G014370 Cucumis sativus L. HOM05D007602 ORTHO05D009086 1.2e-07 59.7 35 74.3
Migut.B00282 Erythranthe guttata HOM05D007602 ORTHO05D009086 1.2e-07 59.7 35 74.3
AL1G56570 Arabidopsis lyrata HOM05D007602 ORTHO05D009086 1.6e-07 59.3 34 73.5
Cpa.g.sc62.91 Carica papaya HOM05D007602 ORTHO05D009086 1.6e-07 59.3 35 74.3
CiPaw.05G059500 Carya illinoinensis HOM05D007602 ORTHO05D009086 1.6e-07 59.3 35 74.3
Duzib132G1115 Durio zibethinus HOM05D007602 ORTHO05D009086 1.6e-07 59.3 35 71.4
Manes.17G097600 Manihot esculenta HOM05D007602 ORTHO05D009086 1.6e-07 59.3 35 71.4
Lsat_1_v5_gn_9_109200 Lactuca sativa HOM05D007602 ORTHO05D009086 2.1e-07 58.9 35 71.4
Nitab4.5_0003281g0040 Nicotiana tabacum HOM05D007602 ORTHO05D009086 2.1e-07 58.9 37 67.6
Nitab4.5_0003816g0110 Nicotiana tabacum HOM05D007602 ORTHO05D009086 2.1e-07 58.9 37 67.6
PGR042G2915 Punica granatum HOM05D007602 ORTHO05D009086 2.1e-07 58.9 35 74.3
Gohir.A04G129200 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.8e-07 58.5 35 71.4
Gohir.A04G129300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.8e-07 58.5 35 71.4
Gohir.D04G174400 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.8e-07 58.5 35 71.4
Gorai.012G163800 Gossypium raimondii HOM05D007602 ORTHO05D009086 2.8e-07 58.5 35 71.4
Gorai.012G163900 Gossypium raimondii HOM05D007602 ORTHO05D009086 2.8e-07 58.5 35 71.4
Medtr4g068710 Medicago truncatula HOM05D007602 ORTHO05D009086 2.8e-07 58.5 35 74.3
Thecc.08G131300 Theobroma cacao HOM05D007602 ORTHO05D009086 2.8e-07 58.5 35 71.4
Sed0020423 Sechium edule HOM05D007602 ORTHO05D009086 3.6e-07 58.2 35 71.4
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 3.6e-07 58.2 35 71.4
unitig_21.g20769 Utricularia gibba HOM05D007602 ORTHO05D009086 3.6e-07 58.2 61 47.5
Oeu007232.1 Olea europaea HOM05D007602 ORTHO05D009086 4.7e-07 57.8 35 71.4
Potri.004G149200 Populus trichocarpa HOM05D007602 ORTHO05D009086 4.7e-07 57.8 35 71.4
Sabra04G0099200 Salix brachista HOM05D007602 ORTHO05D009086 4.7e-07 57.8 35 71.4
CAN.G322.99 Capsicum annuum HOM05D007602 ORTHO05D009086 6.2e-07 57.4 35 68.6
CARHR039420 Cardamine hirsuta HOM05D007602 ORTHO05D009086 6.2e-07 57.4 35 68.6
Ciclev10029767m.g Citrus clementina HOM05D007602 ORTHO05D009086 6.2e-07 57.4 39 64.1
Solyc01g109220.4 Solanum lycopersicum HOM05D007602 ORTHO05D009086 6.2e-07 57.4 35 68.6
PGSC0003DMG400025161 Solanum tuberosum HOM05D007602 ORTHO05D009086 6.2e-07 57.4 35 68.6
THA.LOC104798806 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 6.2e-07 57.4 34 73.5
THA.LOC104808449 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 6.2e-07 57.4 34 73.5
AT1G49410 Arabidopsis thaliana HOM05D007602 ORTHO05D009086 8.1e-07 57.0 34 70.6
Ca_07356_v3 Cicer arietinum L. HOM05D007602 ORTHO05D009086 8.1e-07 57.0 35 68.6
Glyma.11G122300 Glycine max HOM05D007602 ORTHO05D009086 8.1e-07 57.0 35 68.6
Gorai.004G104500 Gossypium raimondii HOM05D007602 ORTHO05D009086 8.1e-07 57.0 35 71.4
Phvul.011G049200 Phaseolus vulgaris HOM05D007602 ORTHO05D009086 8.1e-07 57.0 35 68.6
COL.COLO4_17788 Corchorus olitorius HOM05D007602 ORTHO05D009086 1.1e-06 56.6 35 68.6
Potri.009G110100 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.1e-06 56.6 35 68.6
Thhalv10011932m.g Eutrema salsugineum HOM05D007602 ORTHO05D009086 1.4e-06 56.2 34 70.6
SHI05446 Sapria himalayana HOM05D007602 ORTHO05D009086 1.4e-06 56.2 34 73.5
BcaB02g11073 Brassica carinata HOM05D007602 ORTHO05D009086 1.8e-06 55.8 34 67.6
Duzib248G0323 Durio zibethinus HOM05D007602 ORTHO05D009086 1.8e-06 55.8 35 68.6
Duzib248G0595 Durio zibethinus HOM05D007602 ORTHO05D009086 1.8e-06 55.8 35 68.6
Duzib248G1495 Durio zibethinus HOM05D007602 ORTHO05D009086 1.8e-06 55.8 35 68.6
Gohir.D04G174300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 1.8e-06 55.8 35 68.6
Lj3g0015904 Lotus japonicus HOM05D007602 ORTHO05D009086 1.8e-06 55.8 35 65.7
Glyma.12G047200 Glycine max HOM05D007602 ORTHO05D009086 2.4e-06 55.5 35 65.7
Prupe.8G107900 Prunus persica HOM05D007602 ORTHO05D009086 2.4e-06 55.5 34 70.6
BcaB04g17343 Brassica carinata HOM05D007602 ORTHO05D009086 3.1e-06 55.1 34 67.6
Lalb_Chr03g0025901 Lupinus albus HOM05D007602 ORTHO05D009086 3.1e-06 55.1 35 65.7
Sed0019655 Sechium edule HOM05D007602 ORTHO05D009086 3.1e-06 55.1 35 65.7
FAN20G1774 Fragaria x ananassa HOM05D007602 ORTHO05D009086 5.2e-06 54.3 39 59.0
Lalb_Chr01g0002891 Lupinus albus HOM05D007602 ORTHO05D009086 5.2e-06 54.3 35 62.9
Thecc.02G030000 Theobroma cacao HOM05D007602 ORTHO05D009086 5.2e-06 54.3 35 65.7
Peaxi162Scf00016g01124 Petunia axillaris HOM05D007602 ORTHO05D009086 6.9e-06 53.9 34 64.7
Glyma.12G082000 Glycine max HOM05D007602 ORTHO05D009086 9.0e-06 53.5 35 65.7


User provided reference genes

Program Settings