Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.1e-87 326.6 168 100.0
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 7.4e-68 260.8 183 76.5
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.4e-66 256.5 182 75.3
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.0e-65 252.7 186 75.3
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 5.7e-60 234.6 185 70.3
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 5.7e-60 234.6 185 70.3
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 5.7e-60 234.6 185 70.3
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.6e-54 216.5 188 65.4
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 3.3e-52 208.8 189 64.0
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 7.4e-52 207.6 185 66.5
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.3e-51 206.8 185 62.2
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 2.8e-51 205.7 188 64.9
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 1.8e-50 203.0 184 64.7
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.2e-48 196.1 192 59.9
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.1e-47 193.7 185 61.1
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 5.5e-47 191.4 188 58.5
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 7.2e-47 191.0 189 56.6
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 7.2e-47 191.0 180 58.9
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 1.8e-45 186.4 185 60.0
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 8.8e-45 184.1 187 58.3
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.1e-44 183.7 189 59.8
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 2.0e-44 183.0 186 55.9
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.0e-44 183.0 178 61.2
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.0e-44 183.0 185 57.3
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.0e-44 183.0 186 59.1
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 2.6e-44 182.6 180 60.0
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 4.4e-44 181.8 177 59.3
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 5.7e-44 181.4 185 59.5
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 7.4e-44 181.0 181 60.8
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 7.4e-44 181.0 186 58.1
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.8e-43 179.1 189 59.8
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 8.2e-43 177.6 173 61.3
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 1.1e-42 177.2 181 55.8
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 4.1e-42 175.3 178 59.6
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 7.0e-42 174.5 180 56.1
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 9.1e-42 174.1 187 56.7
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 9.1e-42 174.1 184 59.8
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.2e-41 173.7 184 57.1
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 1.6e-41 173.3 184 58.2
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 2.6e-41 172.6 186 55.9
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 3.5e-41 172.2 188 56.9
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 5.9e-41 171.4 188 55.3
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.0e-40 170.6 177 54.8
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.7e-40 169.9 180 54.4
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 2.2e-40 169.5 177 57.6
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.9e-40 169.1 173 59.5
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 2.9e-40 169.1 186 56.5
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 3.8e-40 168.7 186 55.9
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 8.5e-40 167.5 187 55.6
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.1e-39 167.2 177 57.1
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 1.9e-39 166.4 180 55.0
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.5e-39 166.0 188 57.4
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 7.2e-39 164.5 177 54.2
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 7.2e-39 164.5 188 53.7
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 9.4e-39 164.1 171 57.9
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.2e-38 163.7 180 55.0
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 2.1e-38 162.9 183 55.7
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 4.7e-38 161.8 183 56.8
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.1e-38 161.4 189 56.1
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 8.0e-38 161.0 179 55.3
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.8e-37 159.8 187 55.1
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 2.3e-37 159.5 183 53.0
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 3.0e-37 159.1 187 54.5
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 4.0e-37 158.7 187 53.5
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 5.2e-37 158.3 180 53.9
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 6.7e-37 157.9 187 55.6
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 8.8e-37 157.5 177 55.4
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.5e-36 156.8 184 54.9
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.0e-36 156.4 184 54.9
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.6e-36 156.0 177 54.8
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.6e-36 156.0 185 53.0
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.6e-36 156.0 198 53.0
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.3e-35 153.7 180 54.4
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 1.7e-35 153.3 102 77.5
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.8e-35 152.5 167 56.9
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 4.8e-35 151.8 185 52.4
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.3e-35 151.4 192 53.6
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 8.2e-35 151.0 179 53.6
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.4e-34 149.4 176 52.3
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 5.3e-34 148.3 179 52.5
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 9.1e-34 147.5 176 52.8
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 9.1e-34 147.5 181 54.1
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.6e-33 146.7 163 56.4
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.5e-33 145.2 205 51.2
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 1.0e-32 144.1 177 52.0
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 1.3e-32 143.7 182 50.5
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.2e-32 142.9 163 55.8
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 6.5e-32 141.4 186 51.6
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 8.5e-32 141.0 172 51.2
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 1.1e-31 140.6 175 52.0
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 3.2e-31 139.0 187 50.8
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 5.5e-31 138.3 165 56.4
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 9.4e-31 137.5 183 45.9
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.6e-30 136.7 165 56.4
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 2.7e-30 136.0 177 50.8
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.4e-29 133.7 165 55.2
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 8.8e-29 131.0 196 48.0
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 5.7e-28 128.3 176 48.3
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 5.7e-28 128.3 99 71.7
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 7.5e-28 127.9 178 48.9
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 7.5e-28 127.9 70 95.7
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 1.3e-27 127.1 178 46.6
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 2.8e-27 125.9 190 45.3
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 8.3e-27 124.4 131 58.0
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 5.4e-26 121.7 185 47.6
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 7.0e-26 121.3 167 46.7
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 1.2e-25 120.6 179 48.0
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-25 120.6 179 48.0
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 1.2e-25 120.6 179 48.0
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 1.6e-25 120.2 177 48.0
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 2.7e-25 119.4 179 46.4
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 5.9e-25 118.2 226 40.3
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.0e-24 117.5 179 46.9
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 6.5e-24 114.8 199 44.2
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.2e-23 112.1 187 44.9
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.7e-22 109.4 173 46.2
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 6.1e-22 108.2 161 46.6
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.8e-21 106.7 161 46.0
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 4.4e-20 102.1 142 45.1
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 9.8e-20 100.9 75 68.0
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 2.4e-18 96.3 142 46.5
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 2.7e-17 92.8 142 44.4
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.5e-17 92.4 198 39.4
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 7.7e-17 91.3 198 38.9
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 2.9e-16 89.4 82 63.4
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 5.6e-15 85.1 130 43.1
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 5.6e-15 85.1 128 46.1
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.4e-13 80.5 198 36.9
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 1.8e-13 80.1 135 40.7
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 4.0e-13 79.0 160 40.6
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 5.2e-13 78.6 140 37.9
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 1.2e-12 77.4 156 41.0
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 1.5e-12 77.0 170 38.8
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.5e-12 74.7 198 35.9
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 1.7e-11 73.6 176 36.4
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 1.7e-11 73.6 192 33.3
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 3.2e-10 69.3 208 35.6
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 5.4e-10 68.6 54 70.4
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 4.6e-09 65.5 201 34.8
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 1.0e-08 64.3 136 39.0
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.1e-07 60.8 61 60.7
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 1.9e-07 60.1 86 46.5
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 2.5e-07 59.7 61 52.5
Medtr4g064210 Medicago truncatula HOM05D004998 ORTHO05D006104 8.0e-06 54.7 49 55.1


User provided reference genes

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