Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032362 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D111740 2.5e-29 131.3 63 100.0
CSS0029893 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 2.2e-17 91.7 73 67.1
CSS0012661 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 6.5e-17 90.1 73 64.4
CSS0002479 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 7.2e-16 86.7 73 64.4
CSS0026552 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D111796 1.6e-15 85.5 87 55.2
CSS0021916 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 2.7e-15 84.7 55 74.5
CSS0008158 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 2.5e-13 78.2 65 61.5
CSS0009145 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 2.5e-13 78.2 65 61.5
Atru.chr6.2947 Acer truncatum HOM05D000251 ORTHO05D005532 1.4e-08 62.4 37 78.4
Ca_09441_v3 Cicer arietinum L. HOM05D000251 ORTHO05D005532 1.9e-08 62.0 39 74.4
Medtr2g090610 Medicago truncatula HOM05D000251 ORTHO05D005532 1.9e-08 62.0 39 74.4
Psat6g048960 Pisum sativum HOM05D000251 ORTHO05D005532 1.9e-08 62.0 39 74.4
Atru.chr6.2885 Acer truncatum HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Actinidia30461 Actinidia chinensis HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
MSTRG.25929 Avicennia marina HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Cpa.g.sc83.76 Carica papaya HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Ciclev10014095m.g Citrus clementina HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
COL.COLO4_05022 Corchorus olitorius HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Dinv04805 Davidia involucrata HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Duzib132G0720 Durio zibethinus HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Migut.A00166 Erythranthe guttata HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Gohir.A12G139000 Gossypium hirsutum HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Gohir.D12G143400 Gossypium hirsutum HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Gorai.008G154700 Gossypium raimondii HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Lj8C560G4 Lonicera japonica HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Oeu053660.3 Olea europaea HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Peaxi162Scf00495g00121 Petunia axillaris HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
Thecc.02G183800 Theobroma cacao HOM05D000251 ORTHO05D005532 3.2e-08 61.2 37 75.7
GSVIVG01020583001 Vitis vinifera HOM05D000251 ORTHO05D005532 3.2e-08 61.2 39 74.4
Ah.16g106630 Amaranthus hybridus HOM05D000251 ORTHO05D005532 4.2e-08 60.8 37 75.7
Actinidia11011 Actinidia chinensis HOM05D000251 ORTHO05D005532 5.5e-08 60.5 37 75.7
MD09G1243400 Malus domestica HOM05D000251 ORTHO05D005532 5.5e-08 60.5 39 71.8
MD17G1235400 Malus domestica HOM05D000251 ORTHO05D005532 5.5e-08 60.5 39 71.8
Aqoxy4G02325 Aquilegia oxysepala HOM05D000251 ORTHO05D005532 7.2e-08 60.1 37 73.0
Dinv06874 Davidia involucrata HOM05D000251 ORTHO05D005532 7.2e-08 60.1 37 73.0
Lj3g0007891 Lotus japonicus HOM05D000251 ORTHO05D005532 7.2e-08 60.1 39 71.8
Sabra17G0010900 Salix brachista HOM05D000251 ORTHO05D005532 7.2e-08 60.1 36 80.6
TPR.G6498 Trifolium pratense HOM05D000251 ORTHO05D005532 7.2e-08 60.1 39 71.8
CAN.G61.27 Capsicum annuum HOM05D000251 ORTHO05D005532 9.4e-08 59.7 37 73.0
Glyma.12G205800 Glycine max HOM05D000251 ORTHO05D005532 9.4e-08 59.7 39 71.8
Glyma.13G295100 Glycine max HOM05D000251 ORTHO05D005532 9.4e-08 59.7 39 71.8
Lalb_Chr14g0367081 Lupinus albus HOM05D000251 ORTHO05D005532 9.4e-08 59.7 39 71.8
Nitab4.5_0000159g0190 Nicotiana tabacum HOM05D000251 ORTHO05D005532 9.4e-08 59.7 37 73.0
Nitab4.5_0006666g0010 Nicotiana tabacum HOM05D000251 ORTHO05D005532 9.4e-08 59.7 37 73.0
PSO541G3054 Papaver somniferum HOM05D000251 ORTHO05D005532 9.4e-08 59.7 37 73.0
PSO675G3162 Papaver somniferum HOM05D000251 ORTHO05D005532 9.4e-08 59.7 37 73.0
Potri.017G013500 Populus trichocarpa HOM05D000251 ORTHO05D005532 9.4e-08 59.7 39 74.4
Solyc11g017170.1 Solanum lycopersicum HOM05D000251 ORTHO05D005532 9.4e-08 59.7 37 73.0
Sopen11g009100 Solanum pennellii HOM05D000251 ORTHO05D005532 9.4e-08 59.7 37 73.0
PGSC0003DMG400009218 Solanum tuberosum HOM05D000251 ORTHO05D005532 9.4e-08 59.7 37 73.0
VMungo1080G0767 Vigna mungo HOM05D000251 ORTHO05D005532 9.4e-08 59.7 39 71.8
CANSAT64G2637 Cannabis sativa HOM05D000251 ORTHO05D005532 1.2e-07 59.3 39 71.8
FvH4_5g29681 Fragaria vesca HOM05D000251 ORTHO05D005532 1.2e-07 59.3 39 69.2
FAN04G0170 Fragaria x ananassa HOM05D000251 ORTHO05D005532 1.2e-07 59.3 39 69.2
FAN08G1506 Fragaria x ananassa HOM05D000251 ORTHO05D005532 1.2e-07 59.3 39 69.2
Manes.13G143600 Manihot esculenta HOM05D000251 ORTHO05D005532 1.2e-07 59.3 37 73.0
Phvul.005G101400 Phaseolus vulgaris HOM05D000251 ORTHO05D005532 1.2e-07 59.3 39 71.8
Rhsim04G0070600 Rhododendron simsii HOM05D000251 ORTHO05D005532 1.2e-07 59.3 39 69.2
RcHm_v2.0_Chr7g0223111 Rosa chinensis HOM05D000251 ORTHO05D005532 1.2e-07 59.3 39 69.2
SalBow7G3451 Salvia bowleyana HOM05D000251 ORTHO05D005532 1.2e-07 59.3 37 73.0
CSS0015858 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.6e-07 58.9 37 73.0
CiPaw.04G127700 Carya illinoinensis HOM05D000251 ORTHO05D005532 1.6e-07 58.9 37 73.0
ECA240G1856 Erigeron canadensis HOM05D000251 ORTHO05D005532 1.6e-07 58.9 37 73.0
Lsat_1_v5_gn_5_44941 Lactuca sativa HOM05D000251 ORTHO05D005532 1.6e-07 58.9 37 73.0
QL08p039799 Quercus lobata HOM05D000251 ORTHO05D005532 1.6e-07 58.9 37 73.0
DCAR_000770 Daucus carota HOM05D000251 ORTHO05D005532 2.1e-07 58.5 39 69.2
HanXRQChr03g0078711 Helianthus annuus HOM05D000251 ORTHO05D005532 2.1e-07 58.5 37 73.0
Prupe.3G133300 Prunus persica HOM05D000251 ORTHO05D005532 2.7e-07 58.2 39 69.2
TAR627G0503 Trochodendron aralioides HOM05D000251 ORTHO05D005532 2.7e-07 58.2 37 70.3
vmacro09254 Vaccinium macrocarpon HOM05D000251 ORTHO05D005532 2.7e-07 58.2 39 64.1
Lalb_Chr24g0399971 Lupinus albus HOM05D000251 ORTHO05D005532 3.6e-07 57.8 39 69.2
Nn7g36698 Nelumbo nucifera HOM05D000251 ORTHO05D005532 3.6e-07 57.8 39 66.7
CiPaw.03G180300 Carya illinoinensis HOM05D000251 ORTHO05D005532 4.6e-07 57.4 41 65.9
ClCG07G002540 Citrullus lanatus HOM05D000251 ORTHO05D005532 4.6e-07 57.4 37 70.3
MELO3C018710.2 Cucumis melo HOM05D000251 ORTHO05D005532 4.6e-07 57.4 37 70.3
CsaV3_7G005820 Cucumis sativus L. HOM05D000251 ORTHO05D005532 4.6e-07 57.4 37 70.3
Sed0000387 Sechium edule HOM05D000251 ORTHO05D005532 4.6e-07 57.4 37 70.3
Sed0009923 Sechium edule HOM05D000251 ORTHO05D005532 4.6e-07 57.4 37 70.3
Sc12g0003170 Simmondsia chinensis HOM05D000251 ORTHO05D005532 4.6e-07 57.4 37 70.3
HPP92_008210 Vanilla planifolia HOM05D000251 ORTHO05D005532 4.6e-07 57.4 37 67.6
arahy.Tifrunner.gnm1.ann1.28NLID Arachis hypogaea HOM05D000251 ORTHO05D005532 6.1e-07 57.0 39 66.7
MBI15_g37780_MAGBIO Magnolia biondii HOM05D000251 ORTHO05D005532 6.1e-07 57.0 37 70.3
Cfa004459 Carpinus fangiana HOM05D000251 ORTHO05D005532 7.9e-07 56.6 37 70.3
Haze_13211 Corylus avellana HOM05D000251 ORTHO05D005532 7.9e-07 56.6 37 70.3
Haze_13212 Corylus avellana HOM05D000251 ORTHO05D005532 7.9e-07 56.6 37 70.3
BcaB07g30538 Brassica carinata HOM05D000251 ORTHO05D005532 1.0e-06 56.2 39 66.7
PGR142G3105 Punica granatum HOM05D000251 ORTHO05D005532 1.0e-06 56.2 37 70.3
DCAR_004456 Daucus carota HOM05D000251 ORTHO05D005532 1.4e-06 55.8 37 67.6
Aa31LG5G3020 Aethionema arabicum HOM05D000251 ORTHO05D005532 1.8e-06 55.5 39 66.7
AT5G44240 Arabidopsis thaliana HOM05D000251 ORTHO05D005532 1.8e-06 55.5 39 66.7
BcaC06g34580 Brassica carinata HOM05D000251 ORTHO05D005532 1.8e-06 55.5 39 66.7
A06p47370 Brassica napus HOM05D000251 ORTHO05D005532 1.8e-06 55.5 39 66.7
BolC7t43218H Brassica oleracea HOM05D000251 ORTHO05D005532 1.8e-06 55.5 39 66.7
BraA06t27607Z Brassica rapa HOM05D000251 ORTHO05D005532 1.8e-06 55.5 39 66.7
CARHR178990 Cardamine hirsuta HOM05D000251 ORTHO05D005532 1.8e-06 55.5 39 66.7
AUR62032107 Chenopodium quinoa HOM05D000251 ORTHO05D005532 1.8e-06 55.5 37 70.3
AUR62042419 Chenopodium quinoa HOM05D000251 ORTHO05D005532 1.8e-06 55.5 37 70.3
Sp2g09050 Schrenkiella parvula HOM05D000251 ORTHO05D005532 1.8e-06 55.5 39 66.7
unitig_32.g11477 Utricularia gibba HOM05D000251 ORTHO05D005532 1.8e-06 55.5 37 64.9
EL10Ac2g03351 Beta vulgaris HOM05D000251 ORTHO05D005532 2.3e-06 55.1 37 70.3
Eucgr.K01048 Eucalyptus grandis HOM05D000251 ORTHO05D005532 3.0e-06 54.7 37 67.6
AL8G15780 Arabidopsis lyrata HOM05D000251 ORTHO05D005532 3.9e-06 54.3 39 66.7
BcaC03g16645 Brassica carinata HOM05D000251 ORTHO05D005532 3.9e-06 54.3 39 64.1
C02p44780 Brassica napus HOM05D000251 ORTHO05D005532 3.9e-06 54.3 39 64.1
C07p26900 Brassica napus HOM05D000251 ORTHO05D005532 3.9e-06 54.3 39 64.1
BolC2t10522H Brassica oleracea HOM05D000251 ORTHO05D005532 3.9e-06 54.3 39 64.1
Carub.0008s0428 Capsella rubella HOM05D000251 ORTHO05D005532 3.9e-06 54.3 39 66.7
Thhalv10003135m.g Eutrema salsugineum HOM05D000251 ORTHO05D005532 3.9e-06 54.3 39 64.1
ATR0697G110 Amborella trichopoda HOM05D000251 ORTHO05D005532 5.1e-06 53.9 37 62.2
THA.LOC104826038 Tarenaya hassleriana HOM05D000251 ORTHO05D005532 8.8e-06 53.1 39 64.1


User provided reference genes

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