Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032359 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D024713 1.6e-33 145.6 76 100.0
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 6.6e-16 87.0 47 97.9
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 1.5e-15 85.9 47 95.7
CSS0007792 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.9e-15 85.5 47 95.7
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 9.5e-15 83.2 47 93.6
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 9.5e-15 83.2 47 91.5
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.6e-14 82.4 47 91.5
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 2.1e-14 82.0 47 91.5
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 2.8e-14 81.6 47 89.4
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 2.8e-14 81.6 47 89.4
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 2.8e-14 81.6 47 91.5
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 3.6e-14 81.3 47 89.4
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 3.6e-14 81.3 47 89.4
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 4.7e-14 80.9 47 89.4
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 4.7e-14 80.9 47 89.4
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 6.2e-14 80.5 47 89.4
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 6.2e-14 80.5 47 87.2
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 6.2e-14 80.5 47 87.2
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 6.2e-14 80.5 47 87.2
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 6.2e-14 80.5 47 89.4
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 6.2e-14 80.5 47 89.4
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 6.2e-14 80.5 47 89.4
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 6.2e-14 80.5 47 89.4
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 8.1e-14 80.1 47 89.4
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 8.1e-14 80.1 47 87.2
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 8.1e-14 80.1 47 89.4
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 8.1e-14 80.1 47 87.2
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 8.1e-14 80.1 47 87.2
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 8.1e-14 80.1 47 91.5
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 8.1e-14 80.1 47 91.5
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 1.1e-13 79.7 47 89.4
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 1.1e-13 79.7 47 89.4
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 1.1e-13 79.7 47 87.2
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 1.1e-13 79.7 47 89.4
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.1e-13 79.7 47 87.2
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.4e-13 79.3 47 87.2
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 1.4e-13 79.3 47 85.1
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.4e-13 79.3 47 87.2
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.4e-13 79.3 47 87.2
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.4e-13 79.3 47 87.2
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 1.4e-13 79.3 47 87.2
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 1.4e-13 79.3 47 87.2
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.8e-13 79.0 47 87.2
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 1.8e-13 79.0 47 87.2
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 1.8e-13 79.0 47 87.2
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 1.8e-13 79.0 47 87.2
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 1.8e-13 79.0 47 87.2
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.8e-13 79.0 47 87.2
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.8e-13 79.0 47 87.2
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.8e-13 79.0 47 87.2
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 1.8e-13 79.0 48 87.5
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 2.4e-13 78.6 47 85.1
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 2.4e-13 78.6 47 87.2
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 2.4e-13 78.6 47 85.1
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 3.1e-13 78.2 47 87.2
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 3.1e-13 78.2 47 85.1
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 4.0e-13 77.8 47 85.1
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 5.2e-13 77.4 47 85.1
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 5.2e-13 77.4 47 83.0
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 5.2e-13 77.4 47 85.1
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 5.2e-13 77.4 47 85.1
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 5.2e-13 77.4 47 85.1
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 6.8e-13 77.0 47 85.1
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 6.8e-13 77.0 47 83.0
Oeu010165.1 Olea europaea HOM05D003590 ORTHO05D004290 6.8e-13 77.0 45 86.7
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 6.8e-13 77.0 47 85.1
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 8.9e-13 76.6 47 83.0
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 8.9e-13 76.6 47 87.2
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 8.9e-13 76.6 47 85.1
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 8.9e-13 76.6 47 83.0
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 8.9e-13 76.6 47 83.0
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 1.2e-12 76.3 47 83.0
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 1.2e-12 76.3 47 83.0
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 1.2e-12 76.3 47 80.9
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 1.2e-12 76.3 47 83.0
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 1.2e-12 76.3 47 80.9
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.5e-12 75.9 47 85.1
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.5e-12 75.9 47 85.1
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.5e-12 75.9 47 83.0
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 2.0e-12 75.5 47 80.9
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 2.0e-12 75.5 47 83.0
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 2.0e-12 75.5 47 83.0
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 2.0e-12 75.5 47 80.9
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 2.6e-12 75.1 47 83.0
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 2.6e-12 75.1 47 80.9
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 2.6e-12 75.1 47 85.1
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 2.6e-12 75.1 47 80.9
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 2.6e-12 75.1 47 80.9
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 2.6e-12 75.1 47 80.9
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 3.4e-12 74.7 57 70.2
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 3.4e-12 74.7 47 80.9
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 3.4e-12 74.7 46 80.4
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 4.4e-12 74.3 47 80.9
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 80.9
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 80.9
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 78.7
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 78.7
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 78.7
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 80.9
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 76.6
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 5.8e-12 73.9 60 71.7
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 80.9
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 83.0
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 5.8e-12 73.9 47 83.0
AUR62000295 Chenopodium quinoa HOM05D003590 ORTHO05D004290 7.6e-12 73.6 47 78.7
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 7.6e-12 73.6 47 78.7
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 7.6e-12 73.6 47 80.9
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 7.6e-12 73.6 47 80.9
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 9.9e-12 73.2 47 76.6
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 1.3e-11 72.8 46 82.6
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.3e-11 72.8 46 82.6
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 1.3e-11 72.8 47 76.6
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 1.3e-11 72.8 48 75.0
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 1.7e-11 72.4 47 76.6
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 1.7e-11 72.4 47 78.7
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.7e-11 72.4 47 74.5
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 1.7e-11 72.4 47 78.7
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 2.2e-11 72.0 47 76.6
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 2.2e-11 72.0 47 76.6
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 2.2e-11 72.0 47 78.7
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 2.2e-11 72.0 47 76.6
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 2.9e-11 71.6 47 78.7
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 2.9e-11 71.6 47 76.6
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 6.4e-11 70.5 47 74.5
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 6.4e-11 70.5 47 76.6
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 8.4e-11 70.1 47 74.5
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 8.4e-11 70.1 47 74.5
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 8.4e-11 70.1 47 74.5
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 8.4e-11 70.1 47 74.5
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 1.1e-10 69.7 47 74.5
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 1.9e-10 68.9 47 68.1
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 2.4e-10 68.6 47 72.3
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 2.4e-10 68.6 47 72.3
Zm00001eb346500 Zea mays HOM05D003590 ORTHO05D024713 2.4e-10 68.6 46 82.6
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 3.2e-10 68.2 47 72.3
CiPaw.09G006800 Carya illinoinensis HOM05D003590 ORTHO05D004290 3.2e-10 68.2 41 85.4
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 5.4e-10 67.4 47 70.2
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 7.1e-10 67.0 47 74.5
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 9.2e-10 66.6 47 70.2
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 1.2e-09 66.2 47 70.2
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 1.6e-09 65.9 49 67.3
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 1.6e-09 65.9 43 83.7
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 2.1e-09 65.5 47 76.6
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.5e-09 64.7 46 67.4
Zm00001eb122710 Zea mays HOM05D003590 ORTHO05D024713 3.5e-09 64.7 44 81.8
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 6.0e-09 63.9 47 74.5
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 2.3e-08 62.0 46 65.2
Zm00001eb002340 Zea mays HOM05D003590 ORTHO05D024713 1.1e-07 59.7 40 82.5
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 1.5e-07 59.3 47 59.6
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 1.9e-07 58.9 46 63.0
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 4.3e-07 57.8 42 81.0
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 3.6e-06 54.7 48 54.2


User provided reference genes

Program Settings