Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 8.7e-190 666.8 326 100.0
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.5e-136 489.2 342 72.2
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 2.8e-132 475.7 387 65.6
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 6.8e-126 454.5 297 78.5
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.4e-125 452.2 323 70.3
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 4.4e-125 451.8 334 68.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.7e-125 451.4 329 70.5
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 4.1e-123 445.3 320 67.2
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.3e-121 439.5 361 64.5
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 3.8e-121 438.7 327 67.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 3.8e-121 438.7 328 67.7
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.8e-119 432.6 323 67.2
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 4.0e-118 428.7 318 66.7
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 5.7e-117 424.9 319 64.6
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 9.8e-117 424.1 317 65.3
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 3.7e-116 422.2 331 61.3
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 3.7e-116 422.2 330 64.5
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 8.3e-116 421.0 319 64.3
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 8.3e-116 421.0 320 67.5
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-115 420.2 319 65.2
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.8e-115 419.9 315 65.1
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.1e-115 418.7 313 65.2
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.2e-114 417.2 328 64.9
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.6e-114 416.8 299 68.6
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.6e-114 416.8 296 67.6
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 2.7e-114 416.0 326 64.4
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.5e-114 415.6 333 62.2
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-114 415.2 333 61.9
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.3e-113 413.7 318 66.0
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 8.6e-113 411.0 329 63.2
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.1e-112 410.6 275 70.5
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.5e-112 409.5 321 63.9
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 5.6e-112 408.3 284 68.3
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.1e-111 406.4 317 64.0
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.8e-111 406.0 316 64.2
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 3.6e-111 405.6 318 63.5
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 2.3e-110 402.9 317 63.1
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 3.0e-110 402.5 318 63.8
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.0e-110 402.1 326 62.0
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 8.9e-110 401.0 329 61.7
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.5e-109 400.2 328 63.1
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.5e-109 400.2 328 63.1
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.5e-109 400.2 286 67.5
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.5e-109 400.2 317 63.1
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.0e-109 399.8 319 61.8
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.6e-109 399.4 319 61.4
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 3.4e-109 399.1 320 61.2
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 4.4e-109 398.7 385 56.1
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.3e-108 397.1 320 63.1
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.2e-108 396.4 321 62.9
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 2.2e-108 396.4 329 63.2
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 6.4e-108 394.8 326 62.3
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 6.4e-108 394.8 286 67.1
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.3e-108 394.4 286 66.4
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.4e-107 393.7 320 62.2
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 5.4e-107 391.7 351 56.1
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.6e-106 390.2 323 60.1
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.0e-106 389.8 366 56.0
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.0e-106 389.8 319 61.4
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.7e-106 389.4 323 62.8
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 4.6e-106 388.7 322 60.9
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.3e-105 387.1 318 61.6
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.9e-105 385.6 324 59.3
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 6.6e-105 384.8 320 59.4
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 3.6e-103 379.0 277 65.3
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.4e-102 377.1 290 64.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.8e-102 376.7 316 59.2
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.8e-102 376.7 301 63.5
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.3e-102 376.3 322 58.1
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 5.2e-102 375.2 239 73.2
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 6.8e-102 374.8 252 67.5
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.0e-101 373.2 362 56.6
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 2.0e-101 373.2 213 82.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.0e-101 373.2 306 58.5
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.4e-101 372.1 274 67.2
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 5.8e-101 371.7 281 63.0
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.8e-101 371.7 278 66.9
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 4.9e-100 368.6 288 62.5
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 8.3e-100 367.9 318 59.4
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.1e-99 367.5 320 60.3
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.4e-99 366.3 346 55.8
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.2e-99 365.9 286 62.6
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 4.1e-99 365.5 321 59.2
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 5.4e-99 365.2 323 58.2
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 7.0e-99 364.8 286 62.6
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.0e-98 363.2 322 56.5
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 4.6e-98 362.1 322 58.1
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.6e-98 362.1 328 58.8
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 7.8e-98 361.3 327 59.0
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.0e-97 360.9 287 63.1
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.0e-97 360.9 326 56.7
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.7e-97 360.1 249 65.9
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 5.0e-97 358.6 295 60.7
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.9e-96 356.7 281 63.0
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.5e-96 356.3 282 61.0
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 3.3e-96 355.9 326 58.9
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 5.6e-96 355.1 317 57.1
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 5.6e-96 355.1 339 55.8
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.3e-96 354.8 328 58.2
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 9.5e-96 354.4 284 62.0
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 9.5e-96 354.4 301 59.1
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.2e-95 354.0 317 56.8
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 1.2e-95 354.0 318 57.2
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.2e-95 354.0 320 57.8
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.6e-95 353.6 280 62.1
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.4e-94 350.5 285 60.0
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.8e-94 350.1 290 60.0
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 5.2e-94 348.6 276 61.6
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 6.8e-94 348.2 291 60.8
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 8.6e-89 331.3 225 68.0
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.3e-88 329.3 238 63.9
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 4.3e-88 328.9 258 62.0
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 6.2e-87 325.1 290 58.3
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 2.4e-83 313.2 373 46.9
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 7.8e-82 308.1 330 52.7
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.1e-80 304.3 230 65.2
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.8e-76 289.3 196 69.4
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.2e-75 286.2 237 59.5
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 4.2e-75 285.8 244 56.1
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.3e-73 280.8 285 50.2
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.4e-70 270.0 274 51.5
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.1e-70 269.6 214 62.6
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.5e-69 265.8 210 62.4
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.8e-68 262.7 145 82.8
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 2.3e-65 253.4 193 63.7
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.5e-64 250.0 233 50.2
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.5e-64 250.0 233 50.2
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 4.3e-64 249.2 234 51.7
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 6.2e-63 245.4 170 66.5
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 4.2e-59 232.6 161 68.3
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.1e-58 230.3 213 56.8
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 5.1e-57 225.7 284 40.5
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.6e-53 213.4 165 72.7
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 2.2e-52 210.3 165 63.0
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.4e-52 208.4 213 52.6
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.5e-51 206.8 161 64.6
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.8e-49 200.7 193 53.4
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 3.4e-45 186.4 236 40.3
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 4.2e-43 179.5 116 70.7
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 7.2e-43 178.7 199 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.0e-41 174.9 132 63.6
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.5e-40 171.0 301 37.2
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.1e-33 146.0 108 61.1
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.3e-31 141.4 160 48.8
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 7.0e-30 135.6 137 53.3
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 2.1e-26 124.0 169 47.3
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 6.7e-25 119.0 272 31.6
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.0e-21 107.5 76 61.8
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.3e-20 104.8 106 47.2
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 8.5e-20 102.1 76 64.5
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.6e-18 96.7 86 51.2
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 3.6e-18 96.7 72 61.1
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 5.7e-16 89.4 74 64.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.8e-14 84.3 123 43.9
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 3.6e-10 70.1 36 80.6
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 2.6e-08 63.9 181 30.4
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 3.1e-06 57.0 34 73.5


User provided reference genes

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