Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 2.6e-172 608.6 306 100.0
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 2.4e-133 479.2 306 80.1
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 3.5e-124 448.7 295 76.9
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 4.4e-119 431.8 306 70.9
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 8.3e-118 427.6 306 72.2
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 6.0e-116 421.4 305 69.5
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 2.5e-114 416.0 305 68.9
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 7.3e-114 414.5 306 69.9
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 2.6e-111 406.0 271 73.8
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 5.8e-111 404.8 306 67.6
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 5.8e-111 404.8 306 64.4
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 2.9e-110 402.5 306 64.1
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 8.3e-110 401.0 306 64.4
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 1.4e-109 400.2 307 64.5
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 4.1e-109 398.7 302 67.2
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 2.1e-108 396.4 306 63.7
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 2.1e-108 396.4 306 63.4
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 7.8e-108 394.4 305 64.3
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 2.1e-105 386.3 301 67.1
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 1.1e-104 384.0 301 61.8
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 1.4e-104 383.6 330 58.8
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 2.3e-104 382.9 294 68.0
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 2.0e-103 379.8 300 65.0
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 2.0e-103 379.8 306 60.5
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 5.8e-103 378.3 314 63.4
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 5.8e-103 378.3 306 61.4
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 5.8e-103 378.3 306 62.1
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 7.5e-103 377.9 305 62.6
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 2.9e-102 375.9 302 64.6
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 1.1e-101 374.0 305 63.0
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 2.4e-101 372.9 301 60.8
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 3.2e-101 372.5 306 62.7
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 4.1e-101 372.1 306 61.1
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 4.1e-101 372.1 300 62.7
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 4.1e-101 372.1 308 61.4
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 5.4e-101 371.7 307 60.9
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 7.1e-101 371.3 305 61.3
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 9.2e-101 370.9 309 60.2
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 2.1e-100 369.8 304 63.2
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 2.7e-100 369.4 304 62.8
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 3.5e-100 369.0 307 60.6
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 4.6e-100 368.6 306 61.8
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 1.7e-99 366.7 308 61.4
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 6.6e-99 364.8 306 59.8
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 1.9e-98 363.2 300 61.0
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.9e-98 363.2 300 61.0
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 3.3e-98 362.5 305 60.3
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 1.2e-97 360.5 306 60.8
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 1.2e-97 360.5 306 59.8
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 2.8e-97 359.4 308 59.7
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 3.6e-97 359.0 306 61.1
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 4.7e-97 358.6 306 58.8
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 1.1e-96 357.5 302 59.9
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 1.4e-96 357.1 301 60.5
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 6.8e-96 354.8 306 60.1
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 8.9e-96 354.4 306 59.2
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 1.2e-95 354.0 306 59.8
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 1.5e-95 353.6 306 59.8
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 4.4e-95 352.1 306 58.8
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 4.4e-95 352.1 307 58.3
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 4.9e-94 348.6 306 57.2
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 8.4e-94 347.8 305 58.4
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 2.4e-93 346.3 306 58.2
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 2.4e-93 346.3 302 58.3
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 7.1e-93 344.7 306 59.2
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 1.2e-92 344.0 306 57.2
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 1.2e-92 344.0 277 64.6
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 1.6e-92 343.6 306 56.5
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 1.6e-92 343.6 305 58.0
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 1.6e-92 343.6 304 59.5
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 3.5e-92 342.4 306 57.5
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 4.6e-92 342.0 306 57.8
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 7.8e-92 341.3 306 59.2
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 3.0e-91 339.3 306 57.2
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 1.5e-90 337.0 307 57.7
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 1.1e-88 330.9 306 55.6
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 1.4e-88 330.5 306 55.2
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 5.3e-88 328.6 305 56.1
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 5.3e-88 328.6 306 55.6
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 5.3e-88 328.6 306 55.6
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 1.2e-87 327.4 306 55.2
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 1.5e-87 327.0 306 55.6
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 2.0e-87 326.6 306 54.9
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 3.4e-87 325.9 306 54.2
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 5.8e-87 325.1 207 80.2
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 7.6e-87 324.7 294 56.8
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 1.7e-86 323.6 294 56.8
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 7.1e-85 318.2 305 54.1
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 1.9e-82 310.1 303 53.1
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 7.3e-82 308.1 306 53.9
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 9.6e-82 307.8 279 56.6
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 3.8e-78 295.8 307 49.8
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 3.8e-78 295.8 320 50.0
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 6.4e-78 295.0 320 50.0
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 4.3e-74 282.3 306 49.7
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 4.8e-73 278.9 269 53.2
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 4.0e-72 275.8 272 55.5
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 9.3e-69 264.6 310 47.1
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 6.7e-67 258.5 201 66.2
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 2.0e-63 246.9 306 47.4
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 3.0e-59 233.0 238 52.5
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 5.7e-58 228.8 200 59.0
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 1.6e-57 227.3 171 69.6
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 1.0e-46 191.4 258 41.9
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 8.5e-46 188.3 193 54.4
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 1.9e-45 187.2 105 81.9
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 5.5e-37 159.1 218 42.7
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 2.6e-34 150.2 309 31.4
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 7.7e-31 138.7 103 68.0
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 1.1e-29 134.8 131 54.2
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 8.0e-28 128.6 187 41.2
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 1.0e-27 128.3 189 40.7
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 1.2e-26 124.8 187 40.6
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 1.3e-25 121.3 120 52.5
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 4.8e-25 119.4 120 52.5
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 2.0e-23 114.0 118 48.3
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 2.7e-23 113.6 120 50.8
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 8.5e-22 108.6 134 46.3
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 1.2e-18 98.2 305 27.9
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 3.4e-18 96.7 122 45.9
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 8.3e-17 92.0 242 33.5
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 2.4e-16 90.5 68 64.7
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 5.4e-16 89.4 67 65.7
Peaxi162Scf00255g00049 Petunia axillaris HOM05D006244 ORTHO05D007401 9.8e-10 68.6 82 51.2
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 3.2e-08 63.5 59 49.2
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 4.1e-08 63.2 117 33.3


User provided reference genes

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