Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.3e-38 162.5 78 100.0
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.9e-18 95.5 88 56.8
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.7e-17 90.9 46 91.3
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.0e-15 85.5 92 52.2
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.0e-15 85.5 46 80.4
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 3.4e-15 84.7 46 78.3
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 7.5e-15 83.6 46 76.1
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 9.8e-15 83.2 46 78.3
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.3e-14 82.8 46 80.4
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.7e-14 82.4 46 76.1
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.7e-14 82.4 46 76.1
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.7e-14 82.4 46 76.1
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.2e-14 82.0 46 73.9
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.9e-14 81.6 48 70.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.9e-14 81.6 48 70.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.9e-14 81.6 46 73.9
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 4.9e-14 80.9 46 73.9
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 6.3e-14 80.5 48 70.8
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 6.3e-14 80.5 48 70.8
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 6.3e-14 80.5 46 76.1
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 6.3e-14 80.5 48 68.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 6.3e-14 80.5 46 78.3
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 6.3e-14 80.5 48 68.8
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 6.3e-14 80.5 46 71.7
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 8.3e-14 80.1 46 71.7
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 8.3e-14 80.1 46 73.9
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 8.3e-14 80.1 46 76.1
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 8.3e-14 80.1 46 73.9
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.1e-13 79.7 46 73.9
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.1e-13 79.7 46 71.7
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.1e-13 79.7 46 71.7
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-13 79.3 48 66.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-13 79.3 48 66.7
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-13 79.3 48 66.7
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.4e-13 79.3 48 66.7
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.4e-13 79.3 48 66.7
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.4e-13 79.3 48 70.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.8e-13 79.0 46 73.9
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.8e-13 79.0 46 73.9
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.8e-13 79.0 70 50.0
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.4e-13 78.6 48 68.8
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.4e-13 78.6 48 66.7
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.4e-13 78.6 48 66.7
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 3.2e-13 78.2 46 69.6
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 3.2e-13 78.2 48 66.7
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 3.2e-13 78.2 48 70.8
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 3.2e-13 78.2 46 73.9
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.2e-13 78.2 48 64.6
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.1e-13 77.8 48 66.7
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 4.1e-13 77.8 48 64.6
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 4.1e-13 77.8 48 64.6
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.1e-13 77.8 48 66.7
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 69.6
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 69.6
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 71.7
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 71.7
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 71.7
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 71.7
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 71.7
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 71.7
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 4.1e-13 77.8 46 71.7
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.4e-13 77.4 48 68.8
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 5.4e-13 77.4 48 66.7
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 5.4e-13 77.4 46 73.9
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 5.4e-13 77.4 46 73.9
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 5.4e-13 77.4 46 71.7
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 64.6
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 64.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 64.6
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 64.6
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 64.6
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 64.6
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 64.6
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 64.6
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 7.0e-13 77.0 46 73.9
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 7.0e-13 77.0 46 73.9
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 7.0e-13 77.0 46 73.9
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 7.0e-13 77.0 46 71.7
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 7.0e-13 77.0 48 66.7
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 9.2e-13 76.6 48 66.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 9.2e-13 76.6 46 71.7
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 9.2e-13 76.6 45 73.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 9.2e-13 76.6 46 69.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 9.2e-13 76.6 46 69.6
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 9.2e-13 76.6 46 71.7
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.2e-12 76.3 46 71.7
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.2e-12 76.3 48 66.7
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.2e-12 76.3 46 71.7
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.2e-12 76.3 46 71.7
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.2e-12 76.3 46 71.7
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.2e-12 76.3 46 71.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.2e-12 76.3 48 64.6
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.2e-12 76.3 48 72.9
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-12 76.3 46 69.6
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.2e-12 76.3 46 71.7
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.6e-12 75.9 46 69.6
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.6e-12 75.9 48 62.5
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.6e-12 75.9 45 71.1
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.6e-12 75.9 48 64.6
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.0e-12 75.5 46 67.4
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.0e-12 75.5 48 64.6
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.0e-12 75.5 46 73.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 2.0e-12 75.5 46 73.9
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.0e-12 75.5 46 67.4
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 2.7e-12 75.1 40 77.5
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.7e-12 75.1 46 69.6
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.7e-12 75.1 46 71.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 3.5e-12 74.7 48 62.5
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 3.5e-12 74.7 48 66.7
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 3.5e-12 74.7 46 69.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 4.6e-12 74.3 46 67.4
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 4.6e-12 74.3 48 62.5
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.6e-12 74.3 46 73.9
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 4.6e-12 74.3 46 71.7
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.9e-12 73.9 46 71.7
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.9e-12 73.9 46 69.6
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 7.8e-12 73.6 46 67.4
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.0e-11 73.2 46 67.4
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.3e-11 72.8 46 69.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.3e-11 72.8 46 69.6
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.7e-11 72.4 46 65.2
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.7e-11 72.4 46 67.4
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.3e-11 72.0 46 65.2
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.3e-11 72.0 48 66.7
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.3e-11 72.0 48 66.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.9e-11 71.6 46 69.6
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 3.9e-11 71.2 48 62.5
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 5.0e-11 70.9 46 63.0
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 6.6e-11 70.5 46 63.0
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.5e-10 69.3 48 62.5
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.3e-10 68.2 46 60.9
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.6e-10 67.4 46 60.9
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 9.5e-10 66.6 46 63.0
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.6e-09 65.9 55 58.2
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.8e-09 65.1 43 67.4
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 4.7e-09 64.3 46 60.9
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 5.2e-08 60.8 46 56.5
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 5.2e-08 60.8 46 54.3
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.9e-08 60.1 36 72.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.2e-07 59.7 46 60.9
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.5e-07 59.3 38 65.8
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 4.4e-07 57.8 45 51.1
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.7e-06 54.7 35 71.4


User provided reference genes

Program Settings