Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032324 Camellia sinensis var. sinensis HOM05D002027 ORTHO05D004229 2.9e-82 308.5 157 100.0
CSS0038040 Camellia sinensis var. sinensis HOM05D002027 ORTHO05D024703 8.8e-47 190.7 99 100.0
Dinv33435 Davidia involucrata HOM05D002027 ORTHO05D004229 5.3e-44 181.4 173 62.4
GSVIVG01032392001 Vitis vinifera HOM05D002027 ORTHO05D004229 4.2e-41 171.8 145 64.8
TAR374G0231 Trochodendron aralioides HOM05D002027 ORTHO05D004229 4.8e-37 158.3 154 57.8
Hma1.2p1_1747F.1_g300460 Hydrangea macrophylla HOM05D002027 ORTHO05D004229 5.3e-36 154.8 169 53.3
Hma1.2p1_2550F.1_g324240 Hydrangea macrophylla HOM05D002027 ORTHO05D004229 5.3e-36 154.8 169 53.3
Solyc02g067870.3 Solanum lycopersicum HOM05D002027 ORTHO05D004229 1.2e-35 153.7 145 57.9
COL.COLO4_29156 Corchorus olitorius HOM05D002027 ORTHO05D004229 2.0e-35 152.9 135 58.5
Sopen02g016990 Solanum pennellii HOM05D002027 ORTHO05D004229 2.0e-35 152.9 145 56.6
PSO541G4480 Papaver somniferum HOM05D002027 ORTHO05D004229 4.5e-35 151.8 161 53.4
TAR625G0926 Trochodendron aralioides HOM05D002027 ORTHO05D004229 1.3e-34 150.2 133 60.2
Lju41A42G102 Lonicera japonica HOM05D002027 ORTHO05D004229 1.7e-34 149.8 170 50.6
Cc07_g01580 Coffea canephora HOM05D002027 ORTHO05D004229 2.9e-34 149.1 149 58.4
CAN.G1057.9 Capsicum annuum HOM05D002027 ORTHO05D004229 6.5e-34 147.9 150 54.0
vmacro05869 Vaccinium macrocarpon HOM05D002027 ORTHO05D004229 8.5e-34 147.5 152 53.3
PSO541G4249 Papaver somniferum HOM05D002027 ORTHO05D004229 1.1e-33 147.1 119 63.0
Rhsim10G0015500 Rhododendron simsii HOM05D002027 ORTHO05D004229 1.1e-33 147.1 159 54.1
Rhsim10G0016600 Rhododendron simsii HOM05D002027 ORTHO05D004229 1.1e-33 147.1 160 54.4
Peaxi162Scf00080g01317 Petunia axillaris HOM05D002027 ORTHO05D004229 1.5e-33 146.7 158 51.3
Nitab4.5_0001550g0100 Nicotiana tabacum HOM05D002027 ORTHO05D004229 2.5e-33 146.0 161 51.6
Nitab4.5_0002529g0060 Nicotiana tabacum HOM05D002027 ORTHO05D004229 4.2e-33 145.2 162 50.0
Nitab4.5_0003318g0090 Nicotiana tabacum HOM05D002027 ORTHO05D004229 4.2e-33 145.2 136 55.9
Nitab4.5_0001860g0060 Nicotiana tabacum HOM05D002027 ORTHO05D004229 9.4e-33 144.1 141 56.7
Ciclev10017779m.g Citrus clementina HOM05D002027 ORTHO05D004229 1.2e-32 143.7 84 81.0
Prupe.3G292900 Prunus persica HOM05D002027 ORTHO05D004229 4.7e-32 141.7 88 77.3
PSO754G0009 Papaver somniferum HOM05D002027 ORTHO05D004229 8.0e-32 141.0 133 55.6
PSO111G0085 Papaver somniferum HOM05D002027 ORTHO05D004229 1.4e-31 140.2 111 62.2
Migut.H00065 Erythranthe guttata HOM05D002027 ORTHO05D004229 1.8e-31 139.8 161 57.1
Oeu018142.1 Olea europaea HOM05D002027 ORTHO05D004229 1.8e-31 139.8 148 56.1
SGA_v2.0_scaffold18G08275 Striga asiatica HOM05D002027 ORTHO05D004229 1.8e-31 139.8 158 51.3
Oeu054624.1 Olea europaea HOM05D002027 ORTHO05D004229 6.7e-31 137.9 143 55.9
Manes.15G150400 Manihot esculenta HOM05D002027 ORTHO05D004229 8.8e-31 137.5 160 51.2
DCAR_021726 Daucus carota HOM05D002027 ORTHO05D004229 1.5e-30 136.7 144 50.0
Gohir.A07G223800 Gossypium hirsutum HOM05D002027 ORTHO05D004229 4.4e-30 135.2 102 65.7
Aqoxy5G03756 Aquilegia oxysepala HOM05D002027 ORTHO05D004229 1.4e-28 130.2 160 47.5
Actinidia36120 Actinidia chinensis HOM05D002027 ORTHO05D004229 4.1e-28 128.6 71 85.9
Dinv25731 Davidia involucrata HOM05D000001 ORTHO05D000003 4.1e-28 128.6 140 55.7
Gohir.D07G230900 Gossypium hirsutum HOM05D002027 ORTHO05D004229 4.1e-28 128.6 102 62.7
TWI56G0726 Tripterygium wilfordii HOM05D002027 ORTHO05D004229 4.1e-28 128.6 94 62.8
Cpa.g.c26638.2 Carica papaya HOM05D002027 ORTHO05D004229 9.1e-28 127.5 95 65.3
Nn3g16699 Nelumbo nucifera HOM05D002027 ORTHO05D004229 9.1e-28 127.5 135 51.9
PSO832G3286 Papaver somniferum HOM05D002027 ORTHO05D004229 1.2e-27 127.1 86 72.1
PGR142G3625 Punica granatum HOM05D002027 ORTHO05D004229 2.2e-26 122.9 115 54.8
PGR142G2457 Punica granatum HOM05D002027 ORTHO05D004229 2.9e-26 122.5 111 56.8
PSO063G1117 Papaver somniferum HOM05D002027 ORTHO05D004229 5.0e-26 121.7 86 68.6
MBI06_g16063_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D004229 1.1e-25 120.6 140 48.6
Aqoxy5G03754 Aquilegia oxysepala HOM05D002027 ORTHO05D004229 2.5e-25 119.4 96 65.6
Cfa007350 Carpinus fangiana HOM05D002027 ORTHO05D004229 4.2e-25 118.6 105 57.1
Eucgr.I01736 Eucalyptus grandis HOM05D002027 ORTHO05D004229 5.5e-25 118.2 126 50.8
Cfa007345 Carpinus fangiana HOM05D002027 ORTHO05D004229 7.2e-25 117.9 98 59.2
Cfa007348 Carpinus fangiana HOM05D002027 ORTHO05D004229 7.2e-25 117.9 98 58.2
PSO111G0070 Papaver somniferum HOM05D002027 ORTHO05D004229 1.2e-24 117.1 79 73.4
CANSAT64G1847 Cannabis sativa HOM05D002027 ORTHO05D004229 2.7e-24 115.9 96 58.3
HanXRQChr09g0255251 Helianthus annuus HOM05D002027 ORTHO05D004229 2.6e-22 109.4 84 60.7
Gorai.001G266000 Gossypium raimondii HOM05D002027 ORTHO05D004229 2.2e-21 106.3 102 55.9
ECA232G2124 Erigeron canadensis HOM05D002027 ORTHO05D004229 4.8e-21 105.1 122 47.5
CSS0010446 Camellia sinensis var. sinensis HOM05D002027 ORTHO05D024703 1.4e-20 103.6 113 53.1
Peaxi162Scf00129g01654 Petunia axillaris HOM05D002027 ORTHO05D004229 4.1e-20 102.1 166 40.4
Lsat_1_v5_gn_4_184180 Lactuca sativa HOM05D002027 ORTHO05D004229 7.0e-20 101.3 92 54.3
CDE08G0066 Ceratophyllum demersum HOM05D002027 ORTHO05D004229 1.0e-18 97.4 86 53.5
ATR0824G228 Amborella trichopoda HOM05D002027 ORTHO05D004229 3.8e-18 95.5 79 60.8
PSO754G0050 Papaver somniferum HOM05D002027 ORTHO05D004229 5.0e-18 95.1 81 65.4
ATR0751G184 Amborella trichopoda HOM05D002027 ORTHO05D004229 2.1e-16 89.7 83 48.2
PGSC0003DMG400006961 Solanum tuberosum HOM05D002027 ORTHO05D004229 1.0e-15 87.4 49 79.6
Rhsim10G0015400 Rhododendron simsii HOM05D002027 ORTHO05D024703 7.5e-14 81.3 53 71.7
CSS0023947 Camellia sinensis var. sinensis HOM05D002027 ORTHO05D004229 1.7e-13 80.1 38 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2504 Anthoceros agrestis HOM05D002027 ORTHO05D004229 3.7e-13 79.0 83 45.8
vmacro05870 Vaccinium macrocarpon HOM05D002027 ORTHO05D024703 4.9e-13 78.6 61 63.9
Rhsim10G0016500 Rhododendron simsii HOM05D000047 ORTHO05D000044 1.1e-12 77.4 46 76.1
SEGI_28474 Sequoiadendron giganteum HOM05D002027 ORTHO05D004229 1.4e-12 77.0 80 48.8
QL12p021592 Quercus lobata HOM05D002027 ORTHO05D004229 5.4e-12 75.1 79 50.6
MBI04_g29619_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D004229 1.2e-11 73.9 79 50.6
TAR625G0172 Trochodendron aralioides HOM05D002027 ORTHO05D004229 3.5e-11 72.4 38 89.5
ECA248G3015 Erigeron canadensis HOM05D002027 ORTHO05D004229 1.3e-10 70.5 84 46.4
GSVIVG01001154001 Vitis vinifera HOM05D002027 ORTHO05D004229 1.3e-10 70.5 77 46.8
TAR365G0988 Trochodendron aralioides HOM05D002027 ORTHO05D004229 1.7e-10 70.1 86 43.0
Cc01_g19410 Coffea canephora HOM05D002027 ORTHO05D004229 2.3e-10 69.7 79 46.8
TAR629G3331 Trochodendron aralioides HOM05D002027 ORTHO05D004229 2.3e-10 69.7 38 84.2
CSS0025689 Camellia sinensis var. sinensis HOM05D002027 ORTHO05D004229 2.9e-10 69.3 81 43.2
DCAR_002729 Daucus carota HOM05D002027 ORTHO05D004229 2.9e-10 69.3 79 48.1
Lj1C47T3 Lonicera japonica HOM05D002027 ORTHO05D004229 2.9e-10 69.3 83 44.6
CSS0033900 Camellia sinensis var. sinensis HOM05D002027 ORTHO05D004229 3.8e-10 68.9 87 42.5
Eucgr.K03363 Eucalyptus grandis HOM05D002027 ORTHO05D004229 8.6e-10 67.8 86 41.9
TWI59G0219 Tripterygium wilfordii HOM05D002027 ORTHO05D004229 8.6e-10 67.8 80 45.0
Aa31LG10G17000 Aethionema arabicum HOM05D002027 ORTHO05D004229 1.5e-09 67.0 73 45.2
Glyma.19G156900 Glycine max HOM05D002027 ORTHO05D004229 1.5e-09 67.0 79 44.3
Actinidia00758 Actinidia chinensis HOM05D002027 ORTHO05D004229 1.9e-09 66.6 85 42.4
Nn4g26280 Nelumbo nucifera HOM05D002027 ORTHO05D004229 1.9e-09 66.6 86 41.9
Aqoxy2G03366 Aquilegia oxysepala HOM05D002027 ORTHO05D004229 2.5e-09 66.2 79 43.0
Dinv32927 Davidia involucrata HOM05D002027 ORTHO05D004229 2.5e-09 66.2 80 45.0
Prupe.8G240100 Prunus persica HOM05D002027 ORTHO05D004229 2.5e-09 66.2 80 42.5
Sed0015956 Sechium edule HOM05D002027 ORTHO05D004229 2.5e-09 66.2 78 42.3
MSTRG.21554 Avicennia marina HOM05D002027 ORTHO05D004229 3.3e-09 65.9 77 42.9
HanXRQChr01g0003041 Helianthus annuus HOM05D002027 ORTHO05D004229 3.3e-09 65.9 81 43.2
THA.LOC104802230 Tarenaya hassleriana HOM05D002027 ORTHO05D004229 4.3e-09 65.5 66 50.0
ClCG09G007090 Citrullus lanatus HOM05D002027 ORTHO05D004229 5.6e-09 65.1 76 42.1
MELO3C015829.2 Cucumis melo HOM05D002027 ORTHO05D004229 5.6e-09 65.1 76 42.1
Lsat_1_v5_gn_5_187880 Lactuca sativa HOM05D002027 ORTHO05D004229 5.6e-09 65.1 81 43.2
TAR633G0456 Trochodendron aralioides HOM05D002027 ORTHO05D004229 5.6e-09 65.1 38 78.9
Cfa006149 Carpinus fangiana HOM05D002027 ORTHO05D004229 7.3e-09 64.7 79 43.0
Haze_04700 Corylus avellana HOM05D002027 ORTHO05D004229 7.3e-09 64.7 79 43.0
CsaV3_7G028080 Cucumis sativus L. HOM05D002027 ORTHO05D004229 7.3e-09 64.7 76 42.1
PGR044G2334 Punica granatum HOM05D002027 ORTHO05D004229 7.3e-09 64.7 83 41.0
CANSAT25G0400 Cannabis sativa HOM05D002027 ORTHO05D004229 9.5e-09 64.3 77 42.9
CiPaw.07G091100 Carya illinoinensis HOM05D002027 ORTHO05D004229 9.5e-09 64.3 79 44.3
Hma1.2p1_1146F.1_g261450 Hydrangea macrophylla HOM05D002027 ORTHO05D004229 9.5e-09 64.3 79 41.8
Oeu034963.2 Olea europaea HOM05D002027 ORTHO05D004229 9.5e-09 64.3 80 41.2
SGA_v2.0_scaffold1G00486 Striga asiatica HOM05D002027 ORTHO05D004229 9.5e-09 64.3 87 42.5
VMungo1383G2240 Vigna mungo HOM05D002027 ORTHO05D004229 1.2e-08 63.9 79 43.0
Haze_14751 Corylus avellana HOM05D002027 ORTHO05D004229 1.6e-08 63.5 60 58.3
RcHm_v2.0_Chr6g0290951 Rosa chinensis HOM05D002027 ORTHO05D004229 1.6e-08 63.5 88 39.8
AT3G63170 Arabidopsis thaliana HOM05D002027 ORTHO05D004229 2.8e-08 62.8 60 50.0
BcaC07g40795 Brassica carinata HOM05D002027 ORTHO05D004229 2.8e-08 62.8 60 51.7
BcaC07g42706 Brassica carinata HOM05D002027 ORTHO05D004229 2.8e-08 62.8 60 51.7
C08p37880 Brassica napus HOM05D002027 ORTHO05D004229 2.8e-08 62.8 60 51.7
BolC8t51366H Brassica oleracea HOM05D002027 ORTHO05D004229 2.8e-08 62.8 60 51.7
Carub.0005s2984 Capsella rubella HOM05D002027 ORTHO05D004229 2.8e-08 62.8 60 50.0
Thhalv10006140m.g Eutrema salsugineum HOM05D002027 ORTHO05D004229 2.8e-08 62.8 60 51.7
Glyma.03G154600 Glycine max HOM05D002027 ORTHO05D004229 2.8e-08 62.8 79 43.0
A09p54970 Brassica napus HOM05D002027 ORTHO05D004229 3.6e-08 62.4 82 41.5
Thecc.01G277600 Theobroma cacao HOM05D002027 ORTHO05D004229 3.6e-08 62.4 79 41.8
CARHR173490 Cardamine hirsuta HOM05D002027 ORTHO05D004229 4.7e-08 62.0 87 41.4
Gohir.D08G204200 Gossypium hirsutum HOM05D002027 ORTHO05D004229 4.7e-08 62.0 79 41.8
Gorai.004G216200 Gossypium raimondii HOM05D002027 ORTHO05D004229 4.7e-08 62.0 79 41.8
Psat0s4437g0040 Pisum sativum HOM05D002027 ORTHO05D004229 4.7e-08 62.0 84 40.5
Potri.002G052200 Populus trichocarpa HOM05D002027 ORTHO05D004229 4.7e-08 62.0 87 36.8
TPR.G9913 Trifolium pratense HOM05D002027 ORTHO05D004229 4.7e-08 62.0 84 39.3
ATR0332G016 Amborella trichopoda HOM05D002027 ORTHO05D004229 6.1e-08 61.6 80 41.2
AL5G46010 Arabidopsis lyrata HOM05D002027 ORTHO05D004229 6.1e-08 61.6 60 50.0
BraA09t40906Z Brassica rapa HOM05D002027 ORTHO05D004229 6.1e-08 61.6 63 49.2
AUR62004806 Chenopodium quinoa HOM05D002027 ORTHO05D004229 6.1e-08 61.6 83 39.8
AUR62036022 Chenopodium quinoa HOM05D002027 ORTHO05D004229 6.1e-08 61.6 83 39.8
Ciclev10021543m.g Citrus clementina HOM05D002027 ORTHO05D004229 6.1e-08 61.6 66 47.0
FvH4_2g23480 Fragaria vesca HOM05D002027 ORTHO05D004229 6.1e-08 61.6 88 37.5
FAN24G0046 Fragaria x ananassa HOM05D002027 ORTHO05D004229 6.1e-08 61.6 88 37.5
FAN27G1909 Fragaria x ananassa HOM05D002027 ORTHO05D004229 6.1e-08 61.6 88 37.5
Phvul.001G152000 Phaseolus vulgaris HOM05D002027 ORTHO05D004229 6.1e-08 61.6 79 43.0
Pp3c11_25580 Physcomitrium patens HOM05D002027 ORTHO05D004229 6.1e-08 61.6 86 40.7
Rhsim13G0025700 Rhododendron simsii HOM05D002027 ORTHO05D004229 6.1e-08 61.6 137 35.0
Sabra02G0042300 Salix brachista HOM05D002027 ORTHO05D004229 6.1e-08 61.6 87 36.8
arahy.Tifrunner.gnm1.ann1.EK6TEN Arachis hypogaea HOM05D002027 ORTHO05D004229 8.0e-08 61.2 84 39.3
arahy.Tifrunner.gnm1.ann1.EWUD7T Arachis hypogaea HOM05D002027 ORTHO05D004229 8.0e-08 61.2 84 39.3
EL10Ac4g08964 Beta vulgaris HOM05D002027 ORTHO05D004229 8.0e-08 61.2 83 41.0
C04p30060 Brassica napus HOM05D002027 ORTHO05D004229 8.0e-08 61.2 79 40.5
BraA04t15743Z Brassica rapa HOM05D002027 ORTHO05D004229 8.0e-08 61.2 79 40.5
Duzib133G1246 Durio zibethinus HOM05D002027 ORTHO05D004229 1.0e-07 60.8 79 40.5
Zm00001eb107290 Zea mays HOM05D002027 ORTHO05D004229 1.0e-07 60.8 62 46.8
FAN15G2640 Fragaria x ananassa HOM05D002027 ORTHO05D004229 1.4e-07 60.5 88 36.4
Sp5g00360 Schrenkiella parvula HOM05D002027 ORTHO05D004229 1.4e-07 60.5 79 39.2
A04p00240 Brassica napus HOM05D002027 ORTHO05D004229 1.8e-07 60.1 55 54.5
BolC4t24538H Brassica oleracea HOM05D002027 ORTHO05D004229 1.8e-07 60.1 79 39.2
Gohir.A08G186100 Gossypium hirsutum HOM05D002027 ORTHO05D004229 1.8e-07 60.1 79 40.5
COL.COLO4_09084 Corchorus olitorius HOM05D002027 ORTHO05D004229 3.0e-07 59.3 57 56.1
MD03G1263700 Malus domestica HOM05D002027 ORTHO05D004229 3.0e-07 59.3 66 42.4
Hund06892 Selenicereus undatus HOM05D002027 ORTHO05D004229 3.0e-07 59.3 86 38.4
BcaC02g10350 Brassica carinata HOM05D002027 ORTHO05D004229 4.0e-07 58.9 55 52.7
CDE01G0735 Ceratophyllum demersum HOM05D002027 ORTHO05D024703 4.0e-07 58.9 61 44.3
Lj1g0003544 Lotus japonicus HOM05D002027 ORTHO05D004229 4.0e-07 58.9 86 34.9
SalBow4G0768 Salvia bowleyana HOM05D002027 ORTHO05D004229 4.0e-07 58.9 80 37.5
vmacro02577 Vaccinium macrocarpon HOM05D002027 ORTHO05D004229 4.0e-07 58.9 91 41.8
Ca_08605_v3 Cicer arietinum L. HOM05D002027 ORTHO05D004229 5.2e-07 58.5 79 38.0
Lalb_Chr01g0020131 Lupinus albus HOM05D002027 ORTHO05D004229 5.2e-07 58.5 81 39.5
CDE10G1045 Ceratophyllum demersum HOM05D002027 ORTHO05D004229 6.8e-07 58.2 87 37.9
Medtr7g094980 Medicago truncatula HOM05D002027 ORTHO05D004229 6.8e-07 58.2 84 36.9
CAN.G1549.5 Capsicum annuum HOM05D002027 ORTHO05D004229 1.2e-06 57.4 56 48.2
Os07g0571600 Oryza sativa ssp. japonica HOM05D002027 ORTHO05D004229 2.6e-06 56.2 70 40.0
Peaxi162Scf00783g00216 Petunia axillaris HOM05D002027 ORTHO05D004229 2.6e-06 56.2 56 46.4
Cpa.g.sc52.42 Carica papaya HOM05D002027 ORTHO05D004229 4.4e-06 55.5 72 44.4
PSO210G3475 Papaver somniferum HOM05D002027 ORTHO05D004229 4.4e-06 55.5 67 40.3
Nitab4.5_0000759g0170 Nicotiana tabacum HOM05D002027 ORTHO05D004229 5.8e-06 55.1 122 30.3
PSO170G4994 Papaver somniferum HOM05D002027 ORTHO05D004229 5.8e-06 55.1 67 40.3


User provided reference genes

Program Settings