Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 4.1e-312 1074.3 605 100.0
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 3.0e-244 848.6 575 84.7
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.5e-243 845.5 571 82.1
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.1e-238 830.1 533 82.7
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.9e-238 829.3 484 88.4
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 2.7e-237 825.5 492 85.8
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 6.9e-233 810.8 534 79.4
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.0e-231 807.0 533 79.0
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 3.5e-229 798.5 531 77.2
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 8.7e-228 793.9 536 77.6
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.1e-227 793.5 540 79.1
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.1e-227 793.5 512 79.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 3.3e-227 792.0 510 79.4
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 4.8e-226 788.1 511 79.5
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 1.8e-225 786.2 514 81.5
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 3.1e-225 785.4 546 81.0
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 2.0e-224 782.7 547 80.8
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 3.4e-224 781.9 512 80.5
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 5.9e-224 781.2 572 77.8
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 6.5e-223 777.7 509 78.4
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 4.2e-222 775.0 508 77.4
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.6e-221 771.5 510 77.8
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 6.1e-221 771.2 509 81.3
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 3.0e-220 768.8 570 76.5
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 3.9e-220 768.5 546 81.7
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 8.7e-220 767.3 545 80.0
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 4.3e-219 765.0 467 82.2
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 3.7e-218 761.9 543 74.2
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 3.7e-218 761.9 460 84.1
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 4.1e-217 758.4 444 83.8
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 9.0e-217 757.3 555 77.8
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.5e-216 756.5 511 76.7
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 2.0e-216 756.1 562 77.6
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 1.3e-215 753.4 567 74.3
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 1.7e-215 753.1 509 77.6
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 3.8e-215 751.9 510 77.3
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.1e-214 750.4 428 86.0
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 1.1e-214 750.4 514 74.7
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.4e-214 750.0 548 76.6
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 5.5e-214 748.0 543 76.1
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 9.4e-214 747.3 547 76.1
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 1.6e-213 746.5 471 80.9
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 1.6e-213 746.5 537 79.5
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.6e-213 746.5 535 79.8
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 2.7e-213 745.7 513 75.8
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 2.7e-213 745.7 461 81.8
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.0e-212 743.8 462 80.1
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 2.0e-211 739.6 580 68.3
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 2.6e-211 739.2 508 74.8
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 3.3e-211 738.8 435 83.4
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.3e-210 736.9 457 80.3
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.7e-210 736.5 430 85.3
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 2.8e-210 735.7 434 82.5
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 1.1e-209 733.8 474 81.2
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.1e-209 733.8 539 75.9
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.6e-208 729.2 508 74.2
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 4.5e-208 728.4 429 84.4
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 5.9e-208 728.0 508 73.8
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 2.9e-207 725.7 538 73.8
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 5.5e-206 721.5 533 71.3
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 9.4e-206 720.7 440 82.7
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 3.6e-205 718.8 508 74.0
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 8.8e-204 714.1 424 84.9
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 3.3e-203 712.2 468 78.2
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 3.3e-203 712.2 512 75.2
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 9.7e-203 710.7 424 83.7
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 2.6e-200 702.6 509 73.9
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 3.5e-200 702.2 504 72.6
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 4.5e-200 701.8 509 73.5
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 7.7e-200 701.0 534 71.7
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 1.3e-199 700.3 507 75.3
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.2e-199 699.5 419 83.1
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.2e-197 693.7 567 68.1
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.6e-197 693.3 442 78.1
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 2.7e-197 692.6 528 71.0
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 3.6e-197 692.2 430 79.1
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 1.4e-196 690.3 418 80.6
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 1.4e-196 690.3 418 80.6
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.8e-196 689.9 475 75.4
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 3.0e-196 689.1 427 79.2
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 3.0e-196 689.1 435 79.3
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 6.7e-196 688.0 431 78.4
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 7.5e-195 684.5 430 78.8
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 7.5e-195 684.5 442 77.4
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.2e-194 682.9 430 78.8
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 3.7e-194 682.2 430 78.6
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 3.7e-194 682.2 429 78.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 6.3e-194 681.4 430 78.4
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.2e-192 677.2 430 78.1
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 2.0e-192 676.4 425 80.2
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.5e-190 670.2 429 77.4
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 7.2e-190 667.9 512 68.2
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 4.7e-189 665.2 563 71.6
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 8.0e-189 664.5 427 78.5
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.0e-187 659.8 510 71.4
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.8e-186 656.0 510 69.0
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.3e-178 630.6 431 74.5
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.7e-176 622.9 419 74.7
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 7.7e-176 621.3 511 67.1
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 7.7e-176 621.3 424 74.8
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 3.8e-175 619.0 547 68.2
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 1.1e-174 617.5 507 63.3
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 3.0e-172 609.4 531 63.5
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 5.2e-172 608.6 344 86.9
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 7.5e-171 604.7 448 68.8
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 1.3e-170 604.0 402 76.6
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 8.3e-170 601.3 396 78.8
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.4e-169 599.7 396 77.3
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 4.1e-169 599.0 430 73.3
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 5.4e-169 598.6 395 76.5
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 5.9e-168 595.1 508 63.6
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 5.2e-164 582.0 422 70.9
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 1.5e-163 580.5 422 70.6
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 1.7e-162 577.0 364 78.0
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.4e-161 573.9 404 72.5
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 1.9e-161 573.5 352 80.4
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 3.7e-154 549.3 439 64.5
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 3.2e-153 546.2 448 62.7
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 4.1e-153 545.8 431 64.5
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 6.6e-151 538.5 419 65.4
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 2.8e-149 533.1 420 66.9
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 7.3e-142 508.4 433 61.9
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.0e-135 488.0 489 55.2
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.9e-135 486.1 351 70.9
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-134 484.6 508 57.5
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-134 484.6 507 56.4
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 4.5e-131 472.6 424 57.3
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 2.4e-129 466.8 374 62.6
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 3.5e-128 463.0 392 61.5
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 6.0e-128 462.2 364 67.6
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 2.3e-127 460.3 439 56.0
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.4e-124 450.3 454 56.8
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 9.0e-124 448.4 683 41.9
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 3.4e-123 446.4 437 53.5
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-119 434.5 464 55.2
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 3.1e-116 423.3 409 59.2
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 7.9e-112 408.7 405 52.1
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 6.5e-106 389.0 352 57.4
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 3.2e-105 386.7 460 50.2
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 4.6e-104 382.9 471 49.3
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 9.7e-102 375.2 281 69.8
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 5.3e-100 369.4 371 56.6
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 6.5e-98 362.5 475 45.1
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 5.1e-95 352.8 248 74.2
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 6.3e-93 345.9 318 57.2
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 3.4e-91 340.1 442 46.6
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 1.2e-83 315.1 385 42.3
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 5.5e-81 306.2 183 86.3
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 4.4e-78 296.6 204 70.6
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 5.3e-76 289.7 342 46.5
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 4.5e-75 286.6 280 63.2
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.3e-74 285.0 356 50.0
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 9.8e-62 242.3 312 51.6
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 3.3e-41 174.1 98 82.7
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 5.2e-31 140.2 100 67.0
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.4e-28 131.3 193 42.5
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 6.0e-27 126.7 106 62.3
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.7e-26 125.2 123 59.3
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 2.5e-25 121.3 229 41.9
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 7.3e-25 119.8 146 52.1
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 3.6e-24 117.5 93 69.9
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 1.4e-23 115.5 148 45.9
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 7.6e-22 109.8 146 50.7
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 3.8e-21 107.5 123 49.6
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.4e-20 104.8 71 71.8
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 2.1e-19 101.7 155 44.5
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.1e-17 95.9 83 57.8
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.9e-17 95.1 45 93.3
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 4.8e-16 90.5 186 33.9
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 8.1e-16 89.7 46 93.5
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 2.4e-15 88.2 75 53.3
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 4.5e-14 84.0 200 32.5
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.3e-13 82.4 106 45.3
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 6.4e-13 80.1 96 44.8
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 9.3e-12 76.3 123 41.5
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 3.3e-09 67.8 51 62.7
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.4e-07 62.4 199 25.1
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 5.3e-07 60.5 29 93.1
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 9.0e-07 59.7 210 26.2


User provided reference genes

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