Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 2.6e-144 515.4 258 100.0
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 3.3e-107 392.1 248 83.1
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 5.4e-94 348.2 221 81.4
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 3.5e-85 318.9 221 74.2
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 7.3e-83 311.2 221 72.4
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 1.6e-82 310.1 221 72.9
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 2.2e-79 299.7 221 70.1
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 8.4e-79 297.7 221 69.7
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 2.3e-76 289.7 221 67.9
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 2.5e-75 286.2 222 68.5
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 3.3e-75 285.8 221 68.8
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 8.1e-74 281.2 231 65.4
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.3e-71 273.9 223 66.4
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.7e-71 273.5 223 65.5
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 8.4e-71 271.2 221 64.7
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 6.0e-69 265.0 215 65.1
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 5.1e-68 261.9 227 60.8
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 8.7e-68 261.2 231 61.0
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 1.1e-67 260.8 218 62.4
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 2.5e-67 259.6 232 62.1
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 3.3e-67 259.2 223 61.0
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 5.6e-67 258.5 223 61.0
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 5.6e-67 258.5 223 62.8
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 9.6e-67 257.7 221 62.9
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.3e-66 257.3 224 62.5
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 1.6e-66 256.9 230 61.3
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 2.1e-66 256.5 223 61.0
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.6e-66 255.8 222 60.8
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 6.2e-66 255.0 212 62.3
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 8.1e-66 254.6 222 60.4
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 1.4e-65 253.8 229 59.4
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.8e-65 253.4 222 59.9
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 2.4e-65 253.1 218 60.6
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 4.0e-65 252.3 222 63.1
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 1.5e-64 250.4 218 62.4
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 2.0e-64 250.0 222 61.3
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 2.6e-64 249.6 222 62.6
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 3.4e-64 249.2 224 59.8
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 3.4e-64 249.2 224 60.7
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 4.5e-64 248.8 225 61.3
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 5.8e-64 248.4 222 60.8
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 7.6e-64 248.1 222 58.6
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 7.6e-64 248.1 221 58.8
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 9.9e-64 247.7 223 61.9
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 1.3e-63 247.3 221 63.8
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 1.3e-63 247.3 213 60.6
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 1.3e-63 247.3 223 61.4
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 1.3e-63 247.3 224 58.5
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 1.7e-63 246.9 224 59.8
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.7e-63 246.9 220 59.1
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.7e-63 246.9 220 59.1
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 1.7e-63 246.9 213 60.6
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 3.8e-63 245.7 224 58.5
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.8e-63 245.7 220 58.6
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 6.4e-63 245.0 221 59.3
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 8.4e-63 244.6 223 59.2
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 8.4e-63 244.6 221 60.6
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 1.1e-62 244.2 225 60.0
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.1e-62 244.2 222 60.4
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 1.4e-62 243.8 222 59.9
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.4e-62 243.8 222 59.9
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 1.4e-62 243.8 232 59.5
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 1.9e-62 243.4 194 68.0
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 2.4e-62 243.0 227 58.1
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 3.2e-62 242.7 222 61.3
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 3.2e-62 242.7 220 61.4
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.5e-62 241.9 212 60.8
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 5.5e-62 241.9 225 59.1
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 5.5e-62 241.9 219 63.5
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 7.1e-62 241.5 220 60.5
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 7.1e-62 241.5 222 59.5
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 1.6e-61 240.4 234 54.7
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 1.6e-61 240.4 220 60.0
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 2.1e-61 240.0 218 58.7
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 2.7e-61 239.6 221 57.0
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 2.7e-61 239.6 235 58.7
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 2.7e-61 239.6 227 59.5
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 3.5e-61 239.2 222 59.9
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 4.6e-61 238.8 216 59.3
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 6.0e-61 238.4 222 59.9
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 6.0e-61 238.4 232 57.8
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 6.0e-61 238.4 222 61.3
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 6.0e-61 238.4 225 58.2
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 7.9e-61 238.0 221 59.3
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.0e-60 237.7 222 59.0
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.3e-60 237.3 220 60.5
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 1.8e-60 236.9 232 57.3
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.0e-60 236.1 218 59.6
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 3.9e-60 235.7 222 58.1
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 5.1e-60 235.3 217 57.1
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.1e-60 235.3 215 58.1
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 6.7e-60 235.0 219 59.4
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 6.7e-60 235.0 221 58.8
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 8.7e-60 234.6 232 56.0
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 8.7e-60 234.6 212 59.9
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 1.1e-59 234.2 230 53.9
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 1.9e-59 233.4 228 55.3
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 2.5e-59 233.0 238 58.0
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 2.5e-59 233.0 214 57.9
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 2.5e-59 233.0 228 55.3
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 3.3e-59 232.6 212 59.4
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 4.3e-59 232.3 216 56.9
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.3e-59 232.3 226 56.6
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 5.6e-59 231.9 220 59.1
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 7.4e-59 231.5 221 55.7
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.4e-59 231.5 221 57.0
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 7.4e-59 231.5 232 56.9
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.3e-58 230.7 217 58.1
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 1.6e-58 230.3 228 55.7
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 2.1e-58 229.9 230 54.3
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 2.8e-58 229.6 224 57.6
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 6.2e-58 228.4 216 56.5
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 1.1e-57 227.6 230 54.3
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 1.1e-57 227.6 226 56.6
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.4e-57 227.3 224 55.8
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 2.4e-57 226.5 230 53.0
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 3.1e-57 226.1 224 56.7
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 4.0e-57 225.7 218 57.8
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 4.0e-57 225.7 217 55.3
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 5.3e-57 225.3 216 56.5
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 1.2e-56 224.2 217 54.8
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 1.2e-56 224.2 217 54.8
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 1.2e-56 224.2 217 54.8
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 2.0e-56 223.4 244 55.3
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 2.6e-56 223.0 223 57.0
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 3.4e-56 222.6 228 52.2
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 5.8e-56 221.9 225 55.6
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 5.8e-56 221.9 224 55.4
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 7.6e-56 221.5 125 82.4
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 1.3e-55 220.7 230 53.5
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 6.5e-55 218.4 240 51.7
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 8.4e-55 218.0 126 81.7
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.9e-54 216.9 251 50.6
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 3.2e-54 216.1 224 57.1
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 1.9e-51 206.8 231 49.4
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 4.3e-51 205.7 206 58.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.1e-50 203.4 226 51.8
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 3.7e-50 202.6 125 76.8
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 1.1e-49 201.1 216 50.9
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 2.0e-48 196.8 224 51.3
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 3.4e-48 196.1 106 84.9
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 7.6e-48 194.9 121 76.9
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 1.0e-47 194.5 225 51.6
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.0e-47 194.5 196 57.1
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 8.4e-47 191.4 211 56.9
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 7.2e-46 188.3 237 48.1
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 1.2e-45 187.6 199 55.3
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 3.5e-45 186.0 197 56.3
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 4.6e-45 185.7 114 77.2
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 6.1e-45 185.3 116 75.9
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.8e-44 183.7 103 80.6
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 3.0e-44 183.0 212 47.6
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 2.8e-42 176.4 203 50.7
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 1.4e-41 174.1 231 44.2
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 6.9e-41 171.8 239 46.4
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.0e-39 167.9 97 81.4
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.9e-39 166.4 118 66.1
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 7.2e-38 161.8 283 38.5
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 1.2e-37 161.0 101 76.2
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 3.6e-37 159.5 128 63.3
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 7.9e-37 158.3 211 44.1
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 7.9e-37 158.3 198 53.0
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 2.3e-36 156.8 248 41.5
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 2.0e-35 153.7 104 76.0
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 4.3e-35 152.5 252 39.3
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 2.8e-34 149.8 195 48.2
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 1.4e-33 147.5 205 46.8
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 5.0e-31 139.0 247 38.1
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 6.5e-31 138.7 279 37.3
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 1.8e-28 130.6 149 51.0
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 5.1e-28 129.0 197 43.1
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 7.0e-25 118.6 70 75.7
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 4.5e-24 115.9 175 43.4
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 7.2e-22 108.6 148 48.6
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 2.1e-21 107.1 175 45.7
Actinidia24398 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.3e-18 97.8 52 82.7
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 1.1e-17 94.7 242 32.6
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 9.1e-17 91.7 95 53.7
Lsat_1_v5_gn_6_87320 Lactuca sativa HOM05D003598 ORTHO05D009814 4.2e-14 82.8 175 37.1
QL02p006829 Quercus lobata HOM05D006704 ORTHO05D004198 2.4e-09 67.0 92 48.9
MCO04G029 Micromonas commoda HOM05D003598 ORTHO05D004198 1.2e-08 64.7 57 50.9
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 7.7e-08 62.0 140 34.3
QL04p035400 Quercus lobata HOM05D000021 ORTHO05D000010 1.7e-07 60.8 85 48.2
Cc08_g04950 Coffea canephora HOM05D003598 ORTHO05D004198 5.5e-06 55.8 66 51.5
SEGI_32675 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 5.5e-06 55.8 40 57.5
TPR.G20575 Trifolium pratense HOM05D003598 ORTHO05D004198 9.4e-06 55.1 92 44.6


User provided reference genes

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