Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 2.9e-34 148.3 92 100.0
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 2.2e-29 132.1 92 81.5
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.4e-28 129.4 92 73.9
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.2e-27 126.3 92 70.7
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.3e-26 122.9 92 73.9
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 3.8e-26 121.3 68 83.8
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.9e-25 119.0 66 83.3
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 2.5e-25 118.6 66 83.3
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 3.2e-25 118.2 92 65.2
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 4.2e-25 117.9 92 64.1
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 4.2e-25 117.9 69 84.1
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 9.4e-25 116.7 92 66.3
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.6e-24 115.9 68 80.9
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.6e-24 115.9 91 62.6
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 2.1e-24 115.5 67 80.6
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.1e-24 115.5 68 79.4
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.1e-24 115.5 67 79.1
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 2.7e-24 115.2 68 82.4
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 2.7e-24 115.2 68 79.4
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 2.7e-24 115.2 68 79.4
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 3.6e-24 114.8 68 80.9
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 6.1e-24 114.0 65 83.1
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 6.1e-24 114.0 66 77.3
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 8.0e-24 113.6 67 77.6
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 1.0e-23 113.2 68 75.0
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.0e-23 113.2 68 76.5
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.4e-23 112.8 85 80.0
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.8e-23 112.5 92 67.4
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.8e-23 112.5 68 77.9
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 1.8e-23 112.5 85 65.9
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 1.8e-23 112.5 85 65.9
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 2.3e-23 112.1 68 77.9
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 6.8e-23 110.5 68 77.9
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.2e-22 109.8 92 60.9
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.2e-22 109.8 63 77.8
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.2e-22 109.8 61 80.3
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.5e-22 109.4 66 74.2
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 1.5e-22 109.4 66 75.8
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 2.0e-22 109.0 68 73.5
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 2.6e-22 108.6 61 80.3
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 3.4e-22 108.2 61 77.0
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 3.4e-22 108.2 61 77.0
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 3.4e-22 108.2 68 70.6
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 4.4e-22 107.8 85 61.2
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 7.5e-22 107.1 91 62.6
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 9.8e-22 106.7 68 70.6
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.7e-21 105.9 65 75.4
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.2e-21 105.5 67 71.6
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 3.7e-21 104.8 65 70.8
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 4.8e-21 104.4 57 86.0
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 4.8e-21 104.4 66 69.7
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 6.3e-21 104.0 66 71.2
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 8.3e-21 103.6 88 58.0
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 8.3e-21 103.6 108 59.3
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 8.3e-21 103.6 68 69.1
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 8.3e-21 103.6 68 72.1
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.4e-20 102.8 68 67.6
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.8e-20 102.4 68 70.6
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.8e-20 102.4 68 70.6
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 3.1e-20 101.7 68 70.6
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 4.1e-20 101.3 84 61.9
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 4.1e-20 101.3 66 71.2
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 7.0e-20 100.5 67 68.7
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 7.0e-20 100.5 67 70.1
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 9.1e-20 100.1 68 69.1
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 1.2e-19 99.8 85 56.5
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 1.6e-19 99.4 68 67.6
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.0e-19 99.0 65 67.7
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 2.9e-18 95.1 63 66.7
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 8.5e-18 93.6 66 66.7
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.1e-17 93.2 66 66.7
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.1e-17 93.2 66 66.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.5e-17 92.0 66 66.7
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 8.0e-16 87.0 92 56.5
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.8e-15 85.9 66 59.1
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.3e-15 85.5 66 59.1
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 4.0e-15 84.7 71 54.9
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 5.2e-15 84.3 70 61.4
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 8.8e-15 83.6 68 63.2
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.2e-14 83.2 70 54.3
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.5e-14 82.8 64 59.4
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 5.7e-14 80.9 68 54.4
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 5.7e-14 80.9 68 54.4
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 5.7e-14 80.9 68 54.4
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 9.8e-14 80.1 67 58.2
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.8e-13 78.6 67 55.2
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 3.7e-13 78.2 67 55.2
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 3.7e-13 78.2 67 55.2
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 4.9e-13 77.8 67 56.7
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 4.9e-13 77.8 67 53.7
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 4.9e-13 77.8 67 53.7
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 6.3e-13 77.4 68 60.3
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 6.3e-13 77.4 101 41.6
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 6.3e-13 77.4 66 60.6
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.4e-12 76.3 64 60.9
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.8e-12 75.9 43 76.7
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 2.4e-12 75.5 92 45.7
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.1e-12 75.1 67 50.7
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.1e-12 75.1 67 52.2
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 5.4e-12 74.3 57 54.4
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 5.4e-12 74.3 46 65.2
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.2e-11 73.2 67 50.7
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.2e-11 73.2 63 49.2
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 2.7e-11 72.0 65 50.8
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 2.7e-11 72.0 65 50.8
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 2.7e-11 72.0 65 50.8
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 3.5e-11 71.6 89 44.9
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 3.5e-11 71.6 38 76.3
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.0e-10 70.1 65 58.5
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 1.0e-10 70.1 65 49.2
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 3.8e-10 68.2 39 74.4
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 5.0e-10 67.8 71 46.5
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 5.0e-10 67.8 37 81.1
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 6.6e-10 67.4 51 56.9
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 8.6e-10 67.0 39 71.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 1.1e-09 66.6 39 71.8
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.9e-09 65.9 63 49.2
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 2.5e-09 65.5 63 47.6
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 2.5e-09 65.5 37 67.6
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 4.3e-09 64.7 41 63.4
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 5.6e-09 64.3 37 64.9
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 7.3e-09 63.9 42 59.5
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.1e-08 62.4 62 50.0
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 4.7e-08 61.2 37 64.9
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 2.3e-07 58.9 65 44.6
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 3.0e-07 58.5 37 59.5
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 8.9e-07 57.0 37 54.1
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 7.5e-06 53.9 113 35.4
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 9.8e-06 53.5 42 50.0


User provided reference genes

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