Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007272 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 3.6e-43 177.9 96 100.0
CSS0032280 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 3.6e-43 177.9 96 100.0
CSS0013902 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 5.0e-29 131.0 96 79.2
Dinv27608 Davidia involucrata HOM05D001419 ORTHO05D001376 1.0e-21 106.7 73 86.3
Rhsim07G0176600 Rhododendron simsii HOM05D001419 ORTHO05D001376 5.6e-20 100.9 77 77.9
Sed0016461 Sechium edule HOM05D001419 ORTHO05D001376 4.7e-19 97.8 69 78.3
SalBow8G0433 Salvia bowleyana HOM05D001419 ORTHO05D001376 4.0e-18 94.7 69 76.8
SalBow8G5217 Salvia bowleyana HOM05D001419 ORTHO05D001376 4.0e-18 94.7 69 76.8
Carub.0003s0424 Capsella rubella HOM05D001419 ORTHO05D001376 6.8e-18 94.0 69 72.5
CSS0002764 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 1.5e-17 92.8 54 92.6
BcaC05g29982 Brassica carinata HOM05D001419 ORTHO05D001376 2.6e-17 92.0 70 72.9
Hund02495 Selenicereus undatus HOM05D001419 ORTHO05D001376 7.6e-17 90.5 68 75.0
LjContig00470g0006858 Lotus japonicus HOM05D001419 ORTHO05D001376 1.3e-16 89.7 77 67.5
FvH4_5g09200 Fragaria vesca HOM05D001419 ORTHO05D001376 2.2e-16 89.0 68 70.6
FAN04G1873 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.2e-16 89.0 68 70.6
FAN13G1977 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.2e-16 89.0 68 70.6
FAN18G1957 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.2e-16 89.0 68 70.6
Ciclev10031078m.g Citrus clementina HOM05D001419 ORTHO05D001376 2.9e-16 88.6 79 67.1
FAN08G1260 Fragaria x ananassa HOM05D001419 ORTHO05D001376 3.7e-16 88.2 68 70.6
HPP92_011335 Vanilla planifolia HOM05D001419 ORTHO05D001376 4.9e-16 87.8 63 73.0
Haze_07114 Corylus avellana HOM05D001419 ORTHO05D001376 2.4e-15 85.5 79 62.0
vmacro05063 Vaccinium macrocarpon HOM05D001419 ORTHO05D001376 2.4e-15 85.5 55 81.8
CAN.G843.26 Capsicum annuum HOM05D001419 ORTHO05D001376 4.1e-15 84.7 81 64.2
Cfa018722 Carpinus fangiana HOM05D001419 ORTHO05D001376 4.1e-15 84.7 79 62.0
MD12G1231500 Malus domestica HOM05D001419 ORTHO05D001376 5.4e-15 84.3 69 72.5
Peaxi162Scf00314g00524 Petunia axillaris HOM05D001419 ORTHO05D001376 7.1e-15 84.0 81 63.0
Sabra12G0077800 Salix brachista HOM05D001419 ORTHO05D001376 7.1e-15 84.0 76 64.5
MD16G1129000 Malus domestica HOM05D001419 ORTHO05D001376 9.2e-15 83.6 79 59.5
BraA06t26388Z Brassica rapa HOM05D001419 ORTHO05D001376 1.2e-14 83.2 64 71.9
CSS0009563 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 1.2e-14 83.2 68 67.6
Prupe.1G217300 Prunus persica HOM05D001419 ORTHO05D001376 1.2e-14 83.2 68 66.2
A06p34600 Brassica napus HOM05D001419 ORTHO05D001376 2.1e-14 82.4 64 71.9
Cpa.g.sc117.12 Carica papaya HOM05D001419 ORTHO05D001376 2.1e-14 82.4 59 76.3
MD06G1132600 Malus domestica HOM05D001419 ORTHO05D001376 2.1e-14 82.4 68 67.6
RcHm_v2.0_Chr7g0188961 Rosa chinensis HOM05D001419 ORTHO05D001376 2.1e-14 82.4 68 66.2
Nitab4.5_0002116g0060 Nicotiana tabacum HOM05D001419 ORTHO05D001376 3.5e-14 81.6 79 63.3
Oeu001298.2 Olea europaea HOM05D001419 ORTHO05D001376 6.0e-14 80.9 69 68.1
Solyc03g118390.3 Solanum lycopersicum HOM05D001419 ORTHO05D001376 7.8e-14 80.5 68 66.2
Sopen03g037290 Solanum pennellii HOM05D001419 ORTHO05D001376 7.8e-14 80.5 68 66.2
CSS0026667 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 1.0e-13 80.1 75 58.7
THA.LOC104808047 Tarenaya hassleriana HOM05D001419 ORTHO05D001376 1.0e-13 80.1 68 61.8
Lj6A836G34 Lonicera japonica HOM05D001419 ORTHO05D001376 1.3e-13 79.7 68 64.7
ClCG03G004000 Citrullus lanatus HOM05D001419 ORTHO05D001376 1.7e-13 79.3 96 54.2
Gohir.D11G247500 Gossypium hirsutum HOM05D001419 ORTHO05D001376 2.3e-13 79.0 69 65.2
Gorai.007G263800 Gossypium raimondii HOM05D001419 ORTHO05D001376 2.3e-13 79.0 69 65.2
QL10p000923 Quercus lobata HOM05D001419 ORTHO05D001376 2.3e-13 79.0 79 60.8
CARHR189850 Cardamine hirsuta HOM05D001419 ORTHO05D001376 3.0e-13 78.6 68 66.2
Oeu058428.1 Olea europaea HOM05D001419 ORTHO05D001376 3.0e-13 78.6 62 66.1
Lj9A675T37 Lonicera japonica HOM05D001419 ORTHO05D001376 3.9e-13 78.2 112 50.9
Peaxi162Scf00410g00019 Petunia axillaris HOM05D001419 ORTHO05D001376 3.9e-13 78.2 57 73.7
vmacro01028 Vaccinium macrocarpon HOM05D001419 ORTHO05D001376 3.9e-13 78.2 96 53.1
GSVIVG01021966001 Vitis vinifera HOM05D001419 ORTHO05D001376 8.6e-13 77.0 50 82.0
DCAR_031210 Daucus carota HOM05D001419 ORTHO05D001376 1.9e-12 75.9 79 55.7
arahy.Tifrunner.gnm1.ann1.JIRJ73 Arachis hypogaea HOM05D001419 ORTHO05D001376 3.3e-12 75.1 84 57.1
Aa31LG5G15430 Aethionema arabicum HOM05D001419 ORTHO05D001376 4.3e-12 74.7 64 62.5
Rhsim08G0195700 Rhododendron simsii HOM05D001419 ORTHO05D001376 4.3e-12 74.7 94 55.3
Nitab4.5_0000060g0030 Nicotiana tabacum HOM05D001419 ORTHO05D001376 5.6e-12 74.3 68 66.2
Ah.15g092890 Amaranthus hybridus HOM05D001419 ORTHO05D001376 9.6e-12 73.6 58 69.0
BcaNung03996 Brassica carinata HOM05D001419 ORTHO05D001376 9.6e-12 73.6 68 57.4
CBR_g27777 Chara braunii HOM05D001419 ORTHO05D001303 9.6e-12 73.6 107 42.1
Phvul.006G096800 Phaseolus vulgaris HOM05D001419 ORTHO05D001376 1.2e-11 73.2 58 63.8
AUR62009515 Chenopodium quinoa HOM05D001419 ORTHO05D001376 1.6e-11 72.8 68 58.8
Cc02_g32270 Coffea canephora HOM05D001419 ORTHO05D001376 2.1e-11 72.4 81 53.1
MD13G1129100 Malus domestica HOM05D001419 ORTHO05D001376 2.1e-11 72.4 68 57.4
AUR62034773 Chenopodium quinoa HOM05D001419 ORTHO05D001376 2.8e-11 72.0 68 57.4
Ca_09389_v3 Cicer arietinum L. HOM05D001419 ORTHO05D001376 2.8e-11 72.0 63 63.5
Thhalv10020103m.g Eutrema salsugineum HOM05D001419 ORTHO05D001376 3.6e-11 71.6 58 62.1
Ah.02g114670 Amaranthus hybridus HOM05D001419 ORTHO05D001376 6.2e-11 70.9 84 52.4
FAN12G3369 Fragaria x ananassa HOM05D001419 ORTHO05D001376 6.2e-11 70.9 83 55.4
FAN17G3068 Fragaria x ananassa HOM05D001419 ORTHO05D001376 6.2e-11 70.9 83 55.4
Sp3g03830 Schrenkiella parvula HOM05D001419 ORTHO05D001376 6.2e-11 70.9 54 64.8
Ah.03g135620 Amaranthus hybridus HOM05D001419 ORTHO05D001376 8.1e-11 70.5 74 56.8
AUR62005702 Chenopodium quinoa HOM05D001419 ORTHO05D001376 8.1e-11 70.5 79 51.9
FAN07G2814 Fragaria x ananassa HOM05D001419 ORTHO05D001376 8.1e-11 70.5 83 55.4
AUR62028853 Chenopodium quinoa HOM05D001419 ORTHO05D001376 1.1e-10 70.1 80 53.8
Thhalv10024690m.g Eutrema salsugineum HOM05D001419 ORTHO05D001376 1.8e-10 69.3 59 61.0
Hund07015 Selenicereus undatus HOM05D001419 ORTHO05D001376 2.4e-10 68.9 81 58.0
CARHR079320 Cardamine hirsuta HOM05D001419 ORTHO05D001376 3.1e-10 68.6 72 55.6
Actinidia30595 Actinidia chinensis HOM05D001419 ORTHO05D001376 4.0e-10 68.2 64 62.5
MD00G1051700 Malus domestica HOM05D001419 ORTHO05D001376 4.0e-10 68.2 69 62.3
PSO017G3672 Papaver somniferum HOM05D001419 ORTHO05D001376 4.0e-10 68.2 66 59.1
Ciclev10003514m.g Citrus clementina HOM05D001419 ORTHO05D001376 1.2e-09 66.6 50 70.0
AT4G25070 Arabidopsis thaliana HOM05D001419 ORTHO05D001376 1.5e-09 66.2 59 57.6
Carub.0007s1597 Capsella rubella HOM05D001419 ORTHO05D001376 1.5e-09 66.2 58 60.3
PSO478G2126 Papaver somniferum HOM05D001419 ORTHO05D001376 1.5e-09 66.2 66 57.6
BraA01t01587Z Brassica rapa HOM05D001419 ORTHO05D001376 2.0e-09 65.9 59 57.6
Lj5A89G33 Lonicera japonica HOM05D001419 ORTHO05D001376 2.0e-09 65.9 52 69.2
A01p16320 Brassica napus HOM05D001419 ORTHO05D001376 4.4e-09 64.7 59 55.9
Sp7g23050 Schrenkiella parvula HOM05D001419 ORTHO05D001376 4.4e-09 64.7 62 54.8
TWI36G1167 Tripterygium wilfordii HOM05D001419 ORTHO05D001376 4.4e-09 64.7 50 72.0
AL7G28080 Arabidopsis lyrata HOM05D001419 ORTHO05D001376 7.6e-09 63.9 58 55.2
RcHm_v2.0_Chr3g0452891 Rosa chinensis HOM05D001419 ORTHO05D001376 7.6e-09 63.9 101 48.5
CARHR232460 Cardamine hirsuta HOM05D001419 ORTHO05D001376 9.9e-09 63.5 59 57.6
Migut.K01042 Erythranthe guttata HOM05D001419 ORTHO05D001376 9.9e-09 63.5 59 61.0
C01p20470 Brassica napus HOM05D001419 ORTHO05D001376 1.3e-08 63.2 59 55.9
FAN09G0147 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.2e-08 62.4 52 63.5
FAN14G0260 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.2e-08 62.4 52 63.5
Peaxi162Scf00128g01744 Petunia axillaris HOM05D001419 ORTHO05D001376 2.2e-08 62.4 51 70.6
BolC1t01978H Brassica oleracea HOM05D001419 ORTHO05D001376 2.9e-08 62.0 59 54.2
FvH4_6g04230 Fragaria vesca HOM05D001419 ORTHO05D001376 4.9e-08 61.2 67 56.7
FAN05G2203 Fragaria x ananassa HOM05D001419 ORTHO05D001376 4.9e-08 61.2 67 56.7
CSS0017420 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 6.4e-08 60.8 54 61.1
AagrBONN_evm.TU.Sc2ySwM_344.2716 Anthoceros agrestis HOM05D001419 ORTHO05D001376 8.4e-08 60.5 53 58.5
Eucgr.K02199 Eucalyptus grandis HOM05D001419 ORTHO05D001376 8.4e-08 60.5 66 51.5
Os11g0520500 Oryza sativa ssp. japonica HOM05D001419 ORTHO05D001376 1.1e-07 60.1 78 41.0
Pp3c19_10380 Physcomitrium patens HOM05D001419 ORTHO05D001376 1.9e-07 59.3 72 51.4
Sabra03G0119300 Salix brachista HOM05D001419 ORTHO05D001376 1.9e-07 59.3 114 38.6
BcaC09g50813 Brassica carinata HOM05D001419 ORTHO05D001376 3.2e-07 58.5 68 48.5
BraA05t22995Z Brassica rapa HOM05D001419 ORTHO05D001376 4.2e-07 58.2 96 44.8
CDE05G2604 Ceratophyllum demersum HOM05D001419 ORTHO05D001376 7.1e-07 57.4 68 50.0
HanXRQChr12g0379631 Helianthus annuus HOM05D001419 ORTHO05D001376 2.1e-06 55.8 38 76.3
MSTRG.11234 Avicennia marina HOM05D001419 ORTHO05D001376 2.7e-06 55.5 47 63.8
DCAR_021409 Daucus carota HOM05D001419 ORTHO05D001376 2.7e-06 55.5 64 53.1
Zm00001eb170360 Zea mays HOM05D001419 ORTHO05D001376 2.7e-06 55.5 62 45.2
Eucgr.H04424 Eucalyptus grandis HOM05D001419 ORTHO05D001376 3.5e-06 55.1 54 57.4
Actinidia30906 Actinidia chinensis HOM05D001419 ORTHO05D001376 6.0e-06 54.3 43 76.7
arahy.Tifrunner.gnm1.ann1.UB3YHQ Arachis hypogaea HOM05D001419 ORTHO05D001376 7.8e-06 53.9 52 59.6


User provided reference genes

Program Settings