Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.3e-94 349.7 183 100.0
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.1e-67 258.8 171 83.0
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 2.4e-48 196.1 173 66.5
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 2.6e-42 176.0 173 59.0
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 2.4e-40 169.5 167 60.5
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 5.6e-37 158.3 167 56.9
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.6e-34 149.4 176 53.4
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 4.5e-34 148.7 171 53.2
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 4.5e-34 148.7 178 53.4
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.5e-34 148.7 178 53.4
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 5.8e-34 148.3 171 53.8
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.9e-34 147.5 176 52.3
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 9.9e-34 147.5 179 51.4
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.7e-33 146.7 173 52.0
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 1.4e-32 143.7 172 51.7
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 2.4e-32 142.9 176 51.1
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 2.4e-32 142.9 183 50.3
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 3.5e-31 139.0 170 53.5
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 4.6e-31 138.7 171 50.3
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 6.0e-31 138.3 171 48.5
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 6.0e-31 138.3 171 49.1
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 7.9e-31 137.9 171 48.5
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.3e-30 137.1 194 44.3
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 2.3e-30 136.3 176 47.7
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 3.9e-30 135.6 179 47.5
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.1e-29 134.0 169 49.7
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 1.1e-29 134.0 172 50.0
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.5e-29 133.7 170 47.1
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 2.5e-29 132.9 223 41.7
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 7.4e-29 131.3 180 46.7
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 2.8e-28 129.4 176 47.7
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 8.1e-28 127.9 214 41.6
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.8e-27 126.7 173 47.4
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 3.1e-27 125.9 171 47.4
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 5.3e-27 125.2 167 46.1
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 9.0e-27 124.4 172 45.9
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 1.2e-26 124.0 176 44.3
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.2e-26 124.0 155 51.0
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 1.2e-26 124.0 167 45.5
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.5e-26 123.6 169 46.2
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 2.0e-26 123.2 173 46.2
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 2.0e-26 123.2 168 44.6
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 3.4e-26 122.5 167 45.5
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 5.8e-26 121.7 165 45.5
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 7.6e-26 121.3 176 44.3
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 7.6e-26 121.3 175 46.3
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 9.9e-26 120.9 176 44.3
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 9.9e-26 120.9 167 49.1
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 9.9e-26 120.9 169 46.7
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 9.9e-26 120.9 167 46.1
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 9.9e-26 120.9 171 46.8
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 1.3e-25 120.6 169 42.6
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.7e-25 120.2 167 43.7
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 2.2e-25 119.8 169 45.0
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 6.4e-25 118.2 171 45.6
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 8.4e-25 117.9 169 46.2
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.1e-24 117.5 169 43.8
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.4e-24 117.1 169 45.0
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.9e-24 116.7 73 75.3
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.2e-23 114.0 73 72.6
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.2e-23 114.0 180 46.1
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.6e-23 113.6 73 71.2
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 2.1e-23 113.2 160 45.6
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 2.7e-23 112.8 171 43.9
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 3.5e-23 112.5 169 43.8
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 4.6e-23 112.1 78 70.5
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.8e-22 110.2 124 56.5
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.8e-22 110.2 168 44.6
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 3.0e-22 109.4 167 43.7
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 6.7e-22 108.2 171 44.4
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 8.7e-22 107.8 169 42.6
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.5e-21 107.1 168 41.1
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 4.3e-21 105.5 178 42.1
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 6.2e-20 101.7 170 42.4
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 3.1e-19 99.4 170 41.2
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 5.3e-19 98.6 178 38.2
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 5.3e-19 98.6 178 38.2
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 5.3e-19 98.6 178 38.2
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 5.3e-19 98.6 73 61.6
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 9.0e-19 97.8 171 39.8
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.2e-18 97.4 166 40.4
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 3.4e-18 95.9 170 40.0
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 3.4e-18 95.9 170 40.0
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 3.4e-18 95.9 94 57.4
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 5.8e-18 95.1 171 42.7
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 5.8e-18 95.1 149 42.3
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 1.0e-17 94.4 167 37.7
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 6.5e-17 91.7 170 38.8
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 8.4e-17 91.3 174 37.9
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.4e-16 90.5 55 78.2
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 4.2e-16 89.0 169 37.3
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 4.2e-16 89.0 56 71.4
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 7.1e-16 88.2 83 56.6
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 9.3e-16 87.8 169 37.9
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 1.2e-15 87.4 75 58.7
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 6.0e-15 85.1 75 56.0
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 1.3e-14 84.0 52 73.1
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 6.7e-14 81.6 170 35.9
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 6.7e-14 81.6 170 35.3
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 8.7e-14 81.3 70 55.7
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 2.5e-13 79.7 51 72.5
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 1.1e-11 74.3 174 33.9
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 1.4e-11 73.9 76 48.7
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 1.8e-11 73.6 48 72.9


User provided reference genes

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