Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 5.2e-195 684.1 322 100.0
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 9.5e-165 583.6 320 83.4
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 2.4e-160 568.9 322 79.5
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 7.1e-160 567.4 319 81.2
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 6.0e-159 564.3 321 80.1
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 1.5e-157 559.7 319 79.3
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 4.3e-157 558.1 319 80.6
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 5.6e-157 557.8 319 79.3
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 7.3e-157 557.4 320 78.4
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 7.3e-157 557.4 320 80.0
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 2.1e-156 555.8 319 78.7
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 3.6e-156 555.1 319 77.4
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 3.6e-156 555.1 320 79.7
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 8.1e-156 553.9 319 80.3
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 1.4e-155 553.1 320 78.4
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 3.1e-155 552.0 319 77.4
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.0e-155 551.6 319 79.9
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 8.9e-155 550.4 319 78.4
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 8.9e-155 550.4 319 78.4
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 8.9e-155 550.4 319 78.4
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 2.0e-154 549.3 319 78.1
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 2.6e-154 548.9 318 78.9
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 3.4e-154 548.5 320 78.1
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 3.4e-154 548.5 319 76.8
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 4.4e-154 548.1 319 76.5
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 5.8e-154 547.7 319 78.1
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 9.9e-154 547.0 319 78.4
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 1.3e-153 546.6 319 78.7
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 1.7e-153 546.2 322 76.7
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 6.4e-153 544.3 319 78.1
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 6.4e-153 544.3 319 78.1
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 8.4e-153 543.9 319 77.7
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 1.1e-152 543.5 322 77.0
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.1e-152 543.5 320 76.6
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 1.1e-152 543.5 319 77.7
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 5.4e-152 541.2 321 76.3
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 7.1e-152 540.8 319 78.1
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 9.3e-152 540.4 319 76.2
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 9.3e-152 540.4 320 75.9
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 1.2e-151 540.0 322 75.5
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 2.1e-151 539.3 322 75.5
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 2.7e-151 538.9 322 75.5
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 6.0e-151 537.7 319 74.3
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 7.8e-151 537.3 320 76.6
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 1.0e-150 537.0 317 76.0
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.3e-150 536.6 312 77.9
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 1.7e-150 536.2 320 76.9
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 2.3e-150 535.8 320 75.3
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 3.0e-150 535.4 320 75.3
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 3.0e-150 535.4 321 74.5
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 3.0e-150 535.4 320 75.0
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.6e-150 534.3 306 77.8
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.7e-150 533.9 320 75.0
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 1.5e-149 533.1 319 76.5
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.9e-149 532.7 319 74.6
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 2.5e-149 532.3 322 73.9
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 4.3e-149 531.6 317 74.4
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 4.3e-149 531.6 317 74.4
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 2.1e-148 529.3 319 74.9
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 2.8e-148 528.9 317 74.8
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 3.6e-148 528.5 321 74.8
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 3.6e-148 528.5 314 75.8
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.8e-148 528.1 319 75.5
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 4.8e-148 528.1 322 76.4
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 8.1e-148 527.3 319 74.3
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.1e-147 526.9 319 74.6
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.1e-147 526.9 320 73.4
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 1.8e-147 526.2 321 74.5
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 2.4e-147 525.8 320 75.3
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 5.3e-147 524.6 319 74.3
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 6.9e-147 524.2 318 75.5
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 1.5e-146 523.1 320 74.1
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 2.0e-146 522.7 320 73.8
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 2.0e-146 522.7 319 76.2
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 2.6e-146 522.3 322 73.0
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 2.6e-146 522.3 317 74.1
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 4.4e-146 521.5 318 74.2
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 5.8e-146 521.2 323 73.7
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.8e-146 521.2 319 73.4
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 9.9e-146 520.4 317 74.4
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 1.3e-145 520.0 319 73.4
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 1.7e-145 519.6 319 75.5
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 2.2e-145 519.2 322 73.9
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.9e-145 518.8 321 73.2
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 2.9e-145 518.8 319 74.9
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 8.4e-145 517.3 322 72.4
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 4.2e-144 515.0 316 73.1
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 4.2e-144 515.0 319 73.4
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.4e-144 514.6 319 72.7
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 9.3e-144 513.8 314 73.6
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 7.9e-143 510.8 319 74.3
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.0e-142 510.4 322 70.5
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 1.0e-142 510.4 307 75.9
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.0e-142 510.4 322 71.4
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.7e-142 509.6 316 72.2
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 3.0e-142 508.8 319 72.7
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 9.6e-141 503.8 320 70.0
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 9.6e-141 503.8 316 72.5
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.3e-140 503.4 313 73.2
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 4.8e-140 501.5 308 72.4
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 8.1e-140 500.7 319 72.1
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.1e-139 500.4 309 72.8
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 6.9e-139 497.7 310 71.9
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.8e-138 494.6 289 77.9
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 9.9e-138 493.8 289 77.9
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.3e-137 493.4 298 74.5
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 2.2e-137 492.7 309 70.9
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 2.9e-137 492.3 310 70.6
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 3.8e-137 491.9 309 71.2
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 6.4e-137 491.1 309 71.2
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 4.2e-136 488.4 318 71.1
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 7.1e-136 487.6 319 66.5
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 9.3e-136 487.3 318 70.8
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 9.3e-136 487.3 319 67.4
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 1.2e-135 486.9 309 70.2
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.6e-135 486.5 309 68.6
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 2.7e-135 485.7 318 70.4
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.7e-135 485.7 319 68.7
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 4.6e-135 485.0 308 68.2
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 6.0e-135 484.6 318 70.4
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 2.1e-132 476.1 309 67.3
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 9.0e-131 470.7 318 69.5
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 2.2e-129 466.1 276 75.0
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 1.0e-126 457.2 318 67.6
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 3.0e-126 455.7 317 64.4
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 5.1e-126 454.9 290 71.7
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.5e-125 453.4 317 64.0
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.3e-125 452.2 316 65.8
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 5.7e-125 451.4 318 66.0
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 5.3e-123 444.9 321 63.2
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.0e-122 443.0 309 62.5
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 7.6e-122 441.0 295 69.8
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 6.5e-121 438.0 312 61.2
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 8.2e-116 421.0 309 59.2
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.5e-113 411.4 322 61.8
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 6.5e-113 411.4 322 61.8
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.4e-110 403.7 217 82.5
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 6.3e-108 394.8 305 58.7
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 9.1e-107 391.0 304 62.8
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 3.3e-101 372.5 221 73.3
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 2.4e-99 366.3 308 57.5
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 2.2e-92 343.2 309 52.8
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.2e-87 327.4 275 58.9
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.0e-77 293.5 308 50.0
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 9.5e-72 274.6 182 70.3
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.3e-65 254.2 259 50.2
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 5.2e-54 215.7 126 70.6
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.7e-50 203.4 135 69.6
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.7e-44 184.1 118 71.2
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 7.8e-42 175.3 323 32.5
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 1.3e-36 157.9 302 30.5
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 1.4e-30 137.9 351 28.8
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 5.3e-30 136.0 249 34.9
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 7.6e-29 132.1 96 60.4
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.3e-15 88.2 61 65.6
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 9.0e-14 82.0 74 56.8


User provided reference genes

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