Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032252 Camellia sinensis var. sinensis HOM05D008456 ORTHO05D010229 7.8e-42 173.3 84 100.0
Actinidia16647 Actinidia chinensis HOM05D008456 ORTHO05D010229 6.6e-33 143.7 84 83.3
Lj3C1016G2 Lonicera japonica HOM05D008456 ORTHO05D010229 8.3e-28 126.7 84 77.4
vmacro10553 Vaccinium macrocarpon HOM05D008456 ORTHO05D010229 5.2e-22 107.5 78 70.5
EL10Ac6g14422 Beta vulgaris HOM05D008456 ORTHO05D010229 2.6e-21 105.1 85 67.1
GSVIVG01011903001 Vitis vinifera HOM05D008456 ORTHO05D010229 3.7e-20 101.3 84 63.1
Haze_17475 Corylus avellana HOM05D008456 ORTHO05D010229 1.9e-19 99.0 90 65.6
Solyc05g009460.3 Solanum lycopersicum HOM05D008456 ORTHO05D010229 3.2e-19 98.2 86 61.6
CSS0026237 Camellia sinensis var. sinensis HOM05D008456 ORTHO05D010229 1.2e-18 96.3 84 63.1
CiPaw.16G064600 Carya illinoinensis HOM05D008456 ORTHO05D010229 1.6e-18 95.9 88 60.2
CSS0028970 Camellia sinensis var. sinensis HOM05D008456 ORTHO05D010229 3.5e-18 94.7 84 61.9
Cc11_g10220 Coffea canephora HOM05D008456 ORTHO05D010229 7.8e-18 93.6 91 58.2
Manes.14G101800 Manihot esculenta HOM05D008456 ORTHO05D010229 7.8e-18 93.6 89 60.7
Thecc.02G355800 Theobroma cacao HOM05D008456 ORTHO05D010229 7.8e-18 93.6 93 59.1
SalBow8G1526 Salvia bowleyana HOM05D008456 ORTHO05D010229 3.0e-17 91.7 87 63.2
Hund25068 Selenicereus undatus HOM05D008456 ORTHO05D010229 3.0e-17 91.7 85 61.2
Gohir.A12G167400 Gossypium hirsutum HOM05D008456 ORTHO05D010229 6.6e-17 90.5 94 57.4
Prupe.1G310000 Prunus persica HOM05D008456 ORTHO05D010229 1.9e-16 89.0 87 58.6
arahy.Tifrunner.gnm1.ann1.J0DG7J Arachis hypogaea HOM05D008456 ORTHO05D010229 2.5e-16 88.6 87 58.6
Gohir.D12G170800 Gossypium hirsutum HOM05D008456 ORTHO05D010229 9.5e-16 86.7 94 56.4
Gorai.008G183400 Gossypium raimondii HOM05D008456 ORTHO05D010229 9.5e-16 86.7 94 56.4
Gorai.013G076200 Gossypium raimondii HOM05D008456 ORTHO05D010229 1.6e-15 85.9 87 55.2
CiPaw.15G084200 Carya illinoinensis HOM05D008456 ORTHO05D010229 3.6e-15 84.7 89 59.6
Manes.06G069000 Manihot esculenta HOM05D008456 ORTHO05D010229 6.2e-15 84.0 94 54.3
Gohir.D13G066900 Gossypium hirsutum HOM05D008456 ORTHO05D010229 8.1e-15 83.6 87 54.0
Gohir.A13G055200 Gossypium hirsutum HOM05D008456 ORTHO05D010229 1.4e-14 82.8 87 55.2
Lj5g0022784 Lotus japonicus HOM05D008456 ORTHO05D010229 5.2e-14 80.9 63 68.3
Glyma.10G274651 Glycine max HOM05D008456 ORTHO05D010229 8.9e-14 80.1 91 53.8
ECA233G2223 Erigeron canadensis HOM05D008456 ORTHO05D010229 1.2e-13 79.7 80 60.0
Potri.010G125700 Populus trichocarpa HOM05D008456 ORTHO05D010229 1.5e-13 79.3 98 50.0
Sc04g0006490 Simmondsia chinensis HOM05D008456 ORTHO05D010229 3.4e-13 78.2 73 63.0
Nitab4.5_0003330g0080 Nicotiana tabacum HOM05D008456 ORTHO05D010229 7.6e-13 77.0 63 61.9
Rhsim09G0108500 Rhododendron simsii HOM05D000497 ORTHO05D002300 7.6e-13 77.0 59 69.5
HanXRQChr16g0529291 Helianthus annuus HOM05D008456 ORTHO05D010229 2.9e-12 75.1 69 53.6
MD16G1043600 Malus domestica HOM05D008456 ORTHO05D010229 2.9e-12 75.1 84 53.6
Lj6C759T21 Lonicera japonica HOM05D000497 ORTHO05D002300 8.4e-12 73.6 66 66.7
Glyma.20G115200 Glycine max HOM05D008456 ORTHO05D010229 1.1e-11 73.2 118 42.4
Phvul.007G026950 Phaseolus vulgaris HOM05D008456 ORTHO05D010229 2.4e-11 72.0 93 49.5
CsaV3_6G003500 Cucumis sativus L. HOM05D008456 ORTHO05D010229 3.2e-11 71.6 79 54.4
TAR374G1021 Trochodendron aralioides HOM05D008456 ORTHO05D010229 3.2e-11 71.6 69 60.9
Migut.E00334 Erythranthe guttata HOM05D008456 ORTHO05D010229 5.4e-11 70.9 65 60.0
Oeu014305.1 Olea europaea HOM05D000497 ORTHO05D002300 7.1e-11 70.5 77 58.4
FAN22G1960 Fragaria x ananassa HOM05D008456 ORTHO05D010229 2.7e-10 68.6 95 48.4
Sabra10G0095500 Salix brachista HOM05D008456 ORTHO05D010229 6.0e-10 67.4 89 48.3
CiPaw.03G230800 Carya illinoinensis HOM05D008456 ORTHO05D010229 1.3e-09 66.2 116 43.1
TAR622G0689 Trochodendron aralioides HOM05D008456 ORTHO05D010229 3.9e-09 64.7 76 52.6
unitig_22.g5569 Utricularia gibba HOM05D008456 ORTHO05D010229 1.1e-08 63.2 85 50.6
FvH4_4g27490 Fragaria vesca HOM05D008456 ORTHO05D010229 1.9e-08 62.4 95 45.3
Medtr8g023670 Medicago truncatula HOM05D008456 ORTHO05D010229 1.9e-08 62.4 83 49.4
FAN12G3215 Fragaria x ananassa HOM05D008456 ORTHO05D010229 4.3e-08 61.2 95 44.2
Migut.L01069 Erythranthe guttata HOM05D008456 ORTHO05D010229 5.6e-08 60.8 58 58.6
THA.LOC104821939 Tarenaya hassleriana HOM05D011059 ORTHO05D010229 9.6e-08 60.1 85 50.6
Potri.008G120050 Populus trichocarpa HOM05D008456 ORTHO05D010229 2.1e-07 58.9 91 49.5
vmacro01378 Vaccinium macrocarpon HOM05D000497 ORTHO05D002300 2.8e-07 58.5 55 61.8
CARHR061330 Cardamine hirsuta HOM05D011059 ORTHO05D010229 6.2e-07 57.4 46 60.9
A02p15160 Brassica napus HOM05D011059 ORTHO05D010229 8.1e-07 57.0 43 65.1
BraA02t06581Z Brassica rapa HOM05D011059 ORTHO05D010229 8.1e-07 57.0 43 65.1
C02p24890 Brassica napus HOM05D011059 ORTHO05D010229 1.4e-06 56.2 39 69.2
BolC2t08582H Brassica oleracea HOM05D011059 ORTHO05D010229 1.4e-06 56.2 39 69.2
BraA07t30825Z Brassica rapa HOM05D011059 ORTHO05D010229 1.4e-06 56.2 43 65.1
Carub.0002s1507 Capsella rubella HOM05D011059 ORTHO05D010229 1.4e-06 56.2 51 58.8
FAN12G0383 Fragaria x ananassa HOM05D008456 ORTHO05D010229 2.4e-06 55.5 87 44.8
Aa31LG7G9030 Aethionema arabicum HOM05D011059 ORTHO05D010229 4.0e-06 54.7 83 49.4
Aa31sc621G20 Aethionema arabicum HOM05D011059 ORTHO05D010229 9.0e-06 53.5 32 71.9


User provided reference genes

Program Settings