Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032245 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 9.1e-50 199.9 99 100.0
Cpa.g.sc173.21 Carica papaya HOM05D004714 ORTHO05D005614 3.7e-35 151.4 95 84.2
CSS0001667 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 4.9e-35 151.0 97 84.5
Rhsim05G0122400 Rhododendron simsii HOM05D004714 ORTHO05D005614 4.9e-35 151.0 95 82.1
Lj7C659G12 Lonicera japonica HOM05D004714 ORTHO05D005614 1.1e-34 149.8 95 83.2
MSTRG.10455 Avicennia marina HOM05D004714 ORTHO05D005614 2.4e-34 148.7 95 82.1
Manes.14G158566 Manihot esculenta HOM05D004714 ORTHO05D005614 4.1e-34 147.9 95 81.1
Cc05_g03940 Coffea canephora HOM05D004714 ORTHO05D005614 7.0e-34 147.1 95 83.2
GSVIVG01024342001 Vitis vinifera HOM05D004714 ORTHO05D005614 7.0e-34 147.1 95 82.1
PGR142G4249 Punica granatum HOM05D004714 ORTHO05D005614 9.2e-34 146.7 95 80.0
TWI32G1166 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 1.2e-33 146.4 95 83.2
Actinidia25713 Actinidia chinensis HOM05D004714 ORTHO05D005614 1.6e-33 146.0 97 79.4
Dinv25399 Davidia involucrata HOM05D004714 ORTHO05D005614 1.6e-33 146.0 95 81.1
Gohir.A08G018200 Gossypium hirsutum HOM05D004714 ORTHO05D005614 1.6e-33 146.0 95 81.1
Gorai.004G025900 Gossypium raimondii HOM05D004714 ORTHO05D005614 1.6e-33 146.0 95 81.1
SGA_v2.0_scaffold63G21841 Striga asiatica HOM05D004714 ORTHO05D005614 1.6e-33 146.0 95 81.1
unitig_8.g4678 Utricularia gibba HOM05D004714 ORTHO05D005614 1.6e-33 146.0 95 82.1
Potri.018G088400 Populus trichocarpa HOM05D004714 ORTHO05D005614 3.5e-33 144.8 95 81.1
Thecc.09G180100 Theobroma cacao HOM05D004714 ORTHO05D005614 3.5e-33 144.8 95 81.1
CiPaw.08G034200 Carya illinoinensis HOM05D004714 ORTHO05D005614 4.5e-33 144.4 95 80.0
ECA236G1620 Erigeron canadensis HOM05D004714 ORTHO05D005614 5.9e-33 144.1 95 80.0
TAR623G1076 Trochodendron aralioides HOM05D004714 ORTHO05D005614 7.8e-33 143.7 95 78.9
Migut.L01902 Erythranthe guttata HOM05D004714 ORTHO05D005614 1.0e-32 143.3 95 77.9
Eucgr.I01084 Eucalyptus grandis HOM05D004714 ORTHO05D005614 1.0e-32 143.3 95 81.1
RcHm_v2.0_Chr4g0400471 Rosa chinensis HOM05D004714 ORTHO05D005614 1.0e-32 143.3 97 79.4
HanXRQChr06g0179551 Helianthus annuus HOM05D004714 ORTHO05D005614 1.3e-32 142.9 95 78.9
RcHm_v2.0_Chr4g0400331 Rosa chinensis HOM05D004714 ORTHO05D005614 1.3e-32 142.9 97 78.4
RcHm_v2.0_Chr4g0400651 Rosa chinensis HOM05D004714 ORTHO05D005614 1.3e-32 142.9 97 78.4
HanXRQChr10g0294251 Helianthus annuus HOM05D004714 ORTHO05D005614 1.7e-32 142.5 95 78.9
Psat7g257720 Pisum sativum HOM05D004714 ORTHO05D005614 1.7e-32 142.5 95 81.1
Ca_12516_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 2.3e-32 142.1 95 81.1
Ca_12517_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 2.3e-32 142.1 95 81.1
Lj3g0005475 Lotus japonicus HOM05D004714 ORTHO05D005614 2.3e-32 142.1 95 77.9
Lalb_Chr01g0012111 Lupinus albus HOM05D004714 ORTHO05D005614 2.3e-32 142.1 95 78.9
MD13G1245000 Malus domestica HOM05D004714 ORTHO05D005614 2.3e-32 142.1 93 79.6
Phvul.010G157500 Phaseolus vulgaris HOM05D004714 ORTHO05D005614 2.3e-32 142.1 97 80.4
Prupe.1G079700 Prunus persica HOM05D004714 ORTHO05D005614 2.3e-32 142.1 95 78.9
Ciclev10009101m.g Citrus clementina HOM05D004714 ORTHO05D005614 2.9e-32 141.7 95 76.8
Medtr4g009880 Medicago truncatula HOM05D004714 ORTHO05D005614 2.9e-32 141.7 95 80.0
SalBow4G0136 Salvia bowleyana HOM05D004714 ORTHO05D005614 3.8e-32 141.4 95 78.9
SalBow4G0166 Salvia bowleyana HOM05D004714 ORTHO05D005614 3.8e-32 141.4 95 78.9
DCAR_003032 Daucus carota HOM05D004714 ORTHO05D005614 5.0e-32 141.0 95 78.9
FAN12G0160 Fragaria x ananassa HOM05D004714 ORTHO05D005614 5.0e-32 141.0 97 77.3
Oeu031756.1 Olea europaea HOM05D004714 ORTHO05D005614 5.0e-32 141.0 95 80.0
CANSAT11G1559 Cannabis sativa HOM05D004714 ORTHO05D005614 8.6e-32 140.2 93 76.3
MELO3C005041.2 Cucumis melo HOM05D004714 ORTHO05D005614 8.6e-32 140.2 95 77.9
CsaV3_1G012970 Cucumis sativus L. HOM05D004714 ORTHO05D005614 8.6e-32 140.2 95 77.9
Duzib160G0192 Durio zibethinus HOM05D004714 ORTHO05D005614 8.6e-32 140.2 95 77.9
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 8.6e-32 140.2 92 79.3
FvH4_4g07660 Fragaria vesca HOM05D004714 ORTHO05D005614 1.1e-31 139.8 97 76.3
FAN17G0676 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.1e-31 139.8 97 76.3
Glyma.08G214400 Glycine max HOM05D004714 ORTHO05D005614 1.1e-31 139.8 95 80.0
QL11p004848 Quercus lobata HOM05D004714 ORTHO05D005614 1.1e-31 139.8 93 80.6
FAN07G0359 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.5e-31 139.4 97 76.3
MD03G1036000 Malus domestica HOM05D004714 ORTHO05D005614 1.5e-31 139.4 93 78.5
PSO541G2874 Papaver somniferum HOM05D004714 ORTHO05D005614 1.5e-31 139.4 95 77.9
Sc24g0003530 Simmondsia chinensis HOM05D004714 ORTHO05D005614 1.5e-31 139.4 93 77.4
Solyc01g081470.4 Solanum lycopersicum HOM05D004714 ORTHO05D005614 1.5e-31 139.4 95 74.7
Sopen01g033030 Solanum pennellii HOM05D004714 ORTHO05D005614 1.5e-31 139.4 95 74.7
HanXRQChr05g0138351 Helianthus annuus HOM05D004714 ORTHO05D005614 1.9e-31 139.0 95 76.8
RcHm_v2.0_Chr4g0400411 Rosa chinensis HOM05D004714 ORTHO05D005614 1.9e-31 139.0 105 70.5
TPR.G38676 Trifolium pratense HOM05D004714 ORTHO05D005614 1.9e-31 139.0 91 82.4
Peaxi162Scf00907g00027 Petunia axillaris HOM05D004714 ORTHO05D005614 2.5e-31 138.7 95 75.8
CAN.G992.24 Capsicum annuum HOM05D004714 ORTHO05D005614 3.3e-31 138.3 95 72.6
Nn3g18335 Nelumbo nucifera HOM05D004714 ORTHO05D005614 3.3e-31 138.3 95 78.9
THA.LOC104802911 Tarenaya hassleriana HOM05D004714 ORTHO05D005614 3.3e-31 138.3 97 73.2
Nn4g22433 Nelumbo nucifera HOM05D004714 ORTHO05D005614 4.3e-31 137.9 95 77.9
PGSC0003DMG400031122 Solanum tuberosum HOM05D004714 ORTHO05D005614 4.3e-31 137.9 95 73.7
arahy.Tifrunner.gnm1.ann1.ZK581Z Arachis hypogaea HOM05D004714 ORTHO05D005614 5.6e-31 137.5 95 76.8
Aqoxy7G03753 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 7.3e-31 137.1 95 73.7
AL8G33270 Arabidopsis lyrata HOM05D004714 ORTHO05D005614 7.3e-31 137.1 95 75.8
EL10Ac6g14222 Beta vulgaris HOM05D004714 ORTHO05D005614 7.3e-31 137.1 95 75.8
CARHR271100 Cardamine hirsuta HOM05D004714 ORTHO05D005614 7.3e-31 137.1 95 75.8
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 7.3e-31 137.1 95 75.8
AT5G57300 Arabidopsis thaliana HOM05D004714 ORTHO05D005614 9.5e-31 136.7 95 74.7
VMungo0331G1132 Vigna mungo HOM05D004714 ORTHO05D005614 9.5e-31 136.7 95 77.9
PSO675G7537 Papaver somniferum HOM05D004714 ORTHO05D005614 1.2e-30 136.3 93 76.3
arahy.Tifrunner.gnm1.ann1.72XQC0 Arachis hypogaea HOM05D004714 ORTHO05D005614 1.6e-30 136.0 95 75.8
Thhalv10014276m.g Eutrema salsugineum HOM05D004714 ORTHO05D005614 1.6e-30 136.0 95 74.7
Glyma.07G028400 Glycine max HOM05D004714 ORTHO05D005614 1.6e-30 136.0 95 77.9
Carub.0008s1781 Capsella rubella HOM05D004714 ORTHO05D005614 2.1e-30 135.6 95 73.7
COL.COLO4_25457 Corchorus olitorius HOM05D004714 ORTHO05D005614 2.8e-30 135.2 89 78.7
DCAR_002998 Daucus carota HOM05D004714 ORTHO05D005614 2.8e-30 135.2 95 73.7
Sp6g19030 Schrenkiella parvula HOM05D004714 ORTHO05D005614 2.8e-30 135.2 95 73.7
BcaC04g19980 Brassica carinata HOM05D004714 ORTHO05D005614 3.6e-30 134.8 95 73.7
C09p49140 Brassica napus HOM05D004714 ORTHO05D005614 3.6e-30 134.8 95 73.7
BcaB08g36090 Brassica carinata HOM05D004714 ORTHO05D005614 4.7e-30 134.4 95 72.6
A10p14730 Brassica napus HOM05D004714 ORTHO05D005614 4.7e-30 134.4 95 72.6
BraA10t43556Z Brassica rapa HOM05D004714 ORTHO05D005614 4.7e-30 134.4 95 72.6
Sabra18G0076900 Salix brachista HOM05D004714 ORTHO05D005614 4.7e-30 134.4 88 77.3
Aa31LG3G13180 Aethionema arabicum HOM05D004714 ORTHO05D005614 6.1e-30 134.0 95 73.7
ATR0686G131 Amborella trichopoda HOM05D004714 ORTHO05D005614 6.1e-30 134.0 95 73.7
Nitab4.5_0006785g0020 Nicotiana tabacum HOM05D004714 ORTHO05D005614 8.0e-30 133.7 94 74.5
BcaB01g04462 Brassica carinata HOM05D004714 ORTHO05D005614 1.4e-29 132.9 95 71.6
BolC9t57763H Brassica oleracea HOM05D004714 ORTHO05D005614 2.3e-29 132.1 95 71.6
Duzib168G0788 Durio zibethinus HOM05D004714 ORTHO05D005614 2.3e-29 132.1 70 91.4
Zm00001eb398140 Zea mays HOM05D004714 ORTHO05D005614 2.3e-29 132.1 95 72.6
Aqoxy7G03018 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 3.0e-29 131.7 95 71.6
QL08p018134 Quercus lobata HOM05D004714 ORTHO05D005614 3.0e-29 131.7 90 78.9
Zm00001eb362110 Zea mays HOM05D004714 ORTHO05D005614 3.0e-29 131.7 95 72.6
C03p15050 Brassica napus HOM05D004714 ORTHO05D005614 4.0e-29 131.3 95 70.5
BolC3t13947H Brassica oleracea HOM05D004714 ORTHO05D005614 4.0e-29 131.3 95 70.5
BraA03t10598Z Brassica rapa HOM05D004714 ORTHO05D005614 4.0e-29 131.3 95 70.5
Os01g0976600 Oryza sativa ssp. japonica HOM05D004714 ORTHO05D005614 4.0e-29 131.3 95 72.6
SHI02880 Sapria himalayana HOM05D004714 ORTHO05D005614 4.0e-29 131.3 95 72.6
SEGI_34543 Sequoiadendron giganteum HOM05D004714 ORTHO05D005614 4.0e-29 131.3 95 73.7
CDE02G3847 Ceratophyllum demersum HOM05D004714 ORTHO05D005614 5.2e-29 131.0 95 72.6
ClCG03G002280 Citrullus lanatus HOM05D004714 ORTHO05D005614 5.2e-29 131.0 70 90.0
BcaC03g14165 Brassica carinata HOM05D004714 ORTHO05D005614 8.9e-29 130.2 95 70.5
A03p12900 Brassica napus HOM05D004714 ORTHO05D005614 8.9e-29 130.2 95 69.5
A02p08610 Brassica napus HOM05D004714 ORTHO05D005614 1.2e-28 129.8 95 69.5
BraA02t05930Z Brassica rapa HOM05D004714 ORTHO05D005614 1.2e-28 129.8 95 69.5
vmacro19765 Vaccinium macrocarpon HOM05D004714 ORTHO05D005614 2.0e-28 129.0 124 63.7
AUR62014206 Chenopodium quinoa HOM05D004714 ORTHO05D005614 3.4e-28 128.3 70 84.3
AUR62041230 Chenopodium quinoa HOM05D004714 ORTHO05D005614 3.4e-28 128.3 70 84.3
Mapoly0052s0093 Marchantia polymorpha HOM05D004714 ORTHO05D005614 4.9e-27 124.4 95 70.5
Pp3c3_21690 Physcomitrium patens HOM05D004714 ORTHO05D005614 6.4e-27 124.0 97 68.0
AagrBONN_evm.TU.Sc2ySwM_117.468 Anthoceros agrestis HOM05D004714 ORTHO05D005614 2.4e-26 122.1 95 66.3
C02p14380 Brassica napus HOM05D004714 ORTHO05D005614 4.1e-26 121.3 74 77.0
CBR_g3967 Chara braunii HOM05D004714 ORTHO05D005614 4.1e-26 121.3 95 65.3
Haze_14511 Corylus avellana HOM05D004714 ORTHO05D005614 5.4e-26 120.9 103 67.0
Duzib168G1985 Durio zibethinus HOM05D004714 ORTHO05D005614 1.6e-25 119.4 93 62.4
COL.COLO4_36489 Corchorus olitorius HOM05D004714 ORTHO05D005614 2.7e-25 118.6 95 64.2
BolC2t07562H Brassica oleracea HOM05D004714 ORTHO05D005614 4.6e-25 117.9 74 75.7
SMO115G0141 Selaginella moellendorffii HOM05D004714 ORTHO05D005614 4.6e-25 117.9 95 66.3
MD16G1253200 Malus domestica HOM05D004714 ORTHO05D005614 3.0e-24 115.2 93 67.7
PRCOL_00006789 Prasinoderma coloniale HOM05D004714 ORTHO05D005614 6.8e-21 104.0 95 53.7
Cre05.g245450 Chlamydomonas reinhardtii HOM05D004714 ORTHO05D005614 4.4e-20 101.3 95 56.8
MCO01G546 Micromonas commoda HOM05D004714 ORTHO05D005614 4.3e-15 84.7 95 46.3
Gohir.D08G028800 Gossypium hirsutum HOM05D004714 ORTHO05D005614 5.6e-15 84.3 61 73.8
Sed0009644 Sechium edule HOM05D004714 ORTHO05D005614 4.7e-14 81.3 61 73.8
TWI34G0504 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 1.4e-13 79.7 62 67.7
HPP92_017314 Vanilla planifolia HOM05D004714 ORTHO05D005614 8.9e-13 77.0 61 67.2
Haze_26398 Corylus avellana HOM05D004714 ORTHO05D005614 3.4e-12 75.1 89 47.2
Rhsim08G0112000 Rhododendron simsii HOM05D004714 ORTHO05D005614 4.9e-11 71.2 99 47.5
RcHm_v2.0_Chr4g0400591 Rosa chinensis HOM05D004714 ORTHO05D005614 7.8e-09 63.9 34 91.2
Hma1.2p1_0007F.1_g005200 Hydrangea macrophylla HOM05D004714 ORTHO05D005614 7.3e-07 57.4 52 61.5


User provided reference genes

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